FamPlex is a collection of resources for grounding biological entities from text and describing their hierarchical relationships.

Prefix
fplx
Alternative Prefixes
famplex
Keywords
ontology
Links
Homepage
Contact
Benjamin M. Gyori   0000-0001-9439-5346   bgyori
Pattern for Local Unique Identifiers

Local identifiers in FamPlex should match this regular expression:
^[a-zA-Z0-9][A-Za-z0-9_]+$

Example Local Unique Identifier
GPIb_IX_V   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from FamPlex should match this regular expression:
^fplx:[a-zA-Z0-9][A-Za-z0-9_]+$

Example CURIE
fplx:GPIb_IX_V
Publications
2018 FamPlex: a resource for entity recognition and relationship resolution of human protein families and complexes in biomedical text mining.
Metaregistry FamPlex

The metaregistry provides mappings between the Bioregistry and other registries. There are 5 mappings to external registries for fplx with 1 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
AberOWL aberowl FPLX
BioContext biocontext FPLX
BioPortal Prefixes bioportal FPLX
Identifiers.org Identifiers.org logo miriam fplx
Name-to-Thing Name-to-Thing logo n2t fplx
Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE fplx:GPIb_IX_V is used to demonstrate the provides available for fplx. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
FamPlex fplx https://sorgerlab.github.io/famplex/GPIb_IX_V
Bioregistry bioregistry https://bioregistry.io/fplx:GPIb_IX_V
Identifiers.org miriam https://identifiers.org/fplx:GPIb_IX_V
Name-to-Thing n2t https://n2t.net/fplx:GPIb_IX_V