Bioregistry - Drosophila gross anatomy

Registry Drosophila gross anatomy

An ontology of Drosophila melanogaster anatomy.

Prefix

fbbt

Preferred Prefix

FBbt

Alternative Prefixes

FBbt_root FBbt

Version

2022-04-13

Links

Homepage Repository OBO OWL OBO JSON

Contact

Clare Pilgrim 0000-0002-1373-1705 Clare72

Pattern for Local Unique Identifiers

Local identifiers in Drosophila gross anatomy should match this regular expression:
^\d{8}$

Example Local Unique Identifier

00007294 Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from Drosophila gross anatomy should match this regular expression:
^FBbt:\d{8}$

Example CURIE

FBbt:00007294

References

Publication The Drosophila anatomy ontology. [Journal of Biomedical Semantics
Publication A strategy for building neuroanatomy ontologies
Publication The Virtual Fly Brain Browser and Query Interface
Publication FlyBase: anatomical data, images and queries

Ontology

Part Of: FlyBase

Metaregistry

The metaregistry provides mappings between the Bioregistry and other registries. There are 7 mappings to external registries for fbbt.

Registry Name	Metaprefix	External Prefix
BioPortal Prefixes	`bioportal`	`FB-BT`
FAIRSharing	`fairsharing`	`FAIRsharing.y2qkst`
Gene Ontology Registry	`go`	`FBbt`
OBO Foundry	`obofoundry`	`FBbt`
Ontology Lookup Service	`ols`	`fbbt`
OntoBee	`ontobee`	`FBBT`
Prefix Commons	`prefixcommons`	`FBbt`

Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE fbbt:00007294 is used to demonstrate the provides available for fbbt. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name	Metaprefix	URI
Drosophila gross anatomy	`fbbt`	https://flybase.org/cgi-bin/cvreport.pl?id=FBbt:00007294
Bioregistry	`bioregistry`	https://bioregistry.io/fbbt:00007294
OBO Foundry	`obofoundry`	http://purl.obolibrary.org/obo/FBbt_00007294
Ontology Lookup Service	`ols`	https://www.ebi.ac.uk/ols/ontologies/fbbt/terms?iri=http://purl.obolibrary.org/obo/FBbt_00007294
BioPortal Prefixes	`bioportal`	https://bioportal.bioontology.org/ontologies/FB-BT/?p=classes&conceptid=http://purl.obolibrary.org/obo/FBbt_00007294

Normalize prefixes. This can be any capitalization or punctuation variant of the synonyms listed below.

>>> import bioregistry as br
>>> br.normalize_prefix("FBbt_root")
'fbbt'

Get all synonyms:

>>> import bioregistry as br
>>> br.get_synonyms("fbbt")
{'FBbt_root', 'FBbt'}

Get the version:

>>> import bioregistry as br
>>> br.get_version("fbbt")
'2022-04-13'

Get the homepage:

>>> import bioregistry as br
>>> br.get_homepage("fbbt")
'http://purl.obolibrary.org/obo/fbbt'

Get the repository:

>>> import bioregistry as br
>>> br.get_repository("fbbt")
'https://github.com/FlyBase/drosophila-anatomy-developmental-ontology'

Get the OBO download link:

>>> import bioregistry as br
>>> br.get_obo_download("fbbt")
'http://purl.obolibrary.org/obo/fbbt.obo'

Get the OWL download link:

>>> import bioregistry as br
>>> br.get_owl_download("fbbt")
'http://purl.obolibrary.org/obo/fbbt.owl'

Get the JSON download link:

>>> import bioregistry as br
>>> br.get_json_download("fbbt")
'http://purl.obolibrary.org/obo/fbbt.json'

Get the contact's name:

>>> import bioregistry as br
>>> br.get_contact_name("fbbt")
'Clare Pilgrim'

Get the contact's email:

>>> import bioregistry as br
>>> br.get_contact_email("fbbt")
'cp390@cam.ac.uk'

Get the contact's GitHub handle:

>>> import bioregistry as br
>>> br.get_contact_github("fbbt")
'Clare72''

Get the contact's ORCiD identifier:

>>> import bioregistry as br
>>> br.get_contact_orcid("fbbt")
'0000-0002-1373-1705'