Bioregistry - Biological Imaging Methods Ontology

Registry Biological Imaging Methods Ontology

A structured controlled vocabulary of sample preparation, visualization and imaging methods used in biomedical research.

Prefix: fbbi
Preferred Prefix: FBbi
Alternative Prefixes: FBbi
Version: 2020-11-06
License: CC BY 4.0
Links: Homepage Repository OBO OWL
Contact: Willy Wong 0000-0002-8841-5870 wawong
Pattern for Local Unique Identifiers: Local identifiers in Biological Imaging Methods Ontology should match this regular expression:
^\d+$
Example Local Unique Identifier: 00000268 Resolve
Pattern for CURIES: Compact URIs (CURIEs) constructed from Biological Imaging Methods Ontology should match this regular expression:
^fbbi:\d+$
Example CURIE: fbbi:00000268

Metaregistry Biological Imaging Methods Ontology

The metaregistry provides mappings between the Bioregistry and other registries. There are 8 mappings to external registries for fbbi with 2 unique external prefixes.

Registry Name	Metaprefix	External Prefix
AberOWL	`aberowl`	`FBbi`
BioContext	`biocontext`	`FBbi`
BioPortal Prefixes	`bioportal`	`FBbi`
FAIRSharing	`fairsharing`	`FAIRsharing.ny3z9j`
OBO Foundry	`obofoundry`	`fbbi`
Ontology Lookup Service	`ols`	`fbbi`
OntoBee	`ontobee`	`FBBI`
Prefix Commons	`prefixcommons`	`fbbi`

Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE fbbi:00000268 is used to demonstrate the provides available for fbbi. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name	Metaprefix	URI
Biological Imaging Methods Ontology	`fbbi`	http://purl.obolibrary.org/obo/FBbi_00000268
Bioregistry	`bioregistry`	https://bioregistry.io/fbbi:00000268
OBO Foundry	`obofoundry`	http://purl.obolibrary.org/obo/FBbi_00000268
Ontology Lookup Service	`ols`	https://www.ebi.ac.uk/ols/ontologies/fbbi/terms?iri=http://purl.obolibrary.org/obo/FBbi_00000268
BioPortal Prefixes	`bioportal`	https://bioportal.bioontology.org/ontologies/FBbi/?p=classes&conceptid=http://purl.obolibrary.org/obo/FBbi_00000268

Normalize prefixes. This can be any capitalization or punctuation variant of the synonyms listed below.

>>> import bioregistry as br
>>> br.normalize_prefix("FBbi")
'fbbi'

Get all synonyms:

>>> import bioregistry as br
>>> br.get_synonyms("fbbi")
{'FBbi'}

Get the version:

>>> import bioregistry as br
>>> br.get_version("fbbi")
'2020-11-06'

Get the license:

>>> import bioregistry as br
>>> br.get_license("fbbi")
'CC BY 4.0'

Get the homepage:

>>> import bioregistry as br
>>> br.get_homepage("fbbi")
'http://cellimagelibrary.org/'

Get the repository:

>>> import bioregistry as br
>>> br.get_repository("fbbi")
'https://github.com/CRBS/Biological_Imaging_Methods_Ontology'

Get the OBO download link:

>>> import bioregistry as br
>>> br.get_obo_download("fbbi")
'http://aber-owl.net/media/ontologies/FBbi/14/fbbi.obo'

Get the OWL download link:

>>> import bioregistry as br
>>> br.get_owl_download("fbbi")
'http://purl.obolibrary.org/obo/fbbi.owl'

Get the contact's name:

>>> import bioregistry as br
>>> br.get_contact_name("fbbi")
'Willy Wong'

Get the contact's email:

>>> import bioregistry as br
>>> br.get_contact_email("fbbi")
'wawong@gmail.com'

Get the contact's GitHub handle:

>>> import bioregistry as br
>>> br.get_contact_github("fbbi")
'wawong'

Get the contact's ORCiD identifier:

>>> import bioregistry as br
>>> br.get_contact_orcid("fbbi")
'0000-0002-8841-5870'