Ensembl Genomes consists of five sub-portals (for bacteria, protists, fungi, plants and invertebrate metazoa) designed to complement the availability of vertebrate genomes in Ensembl. This collection is concerned with plant genomes.
- Prefix
ensembl.plant- Keywords
- genome
- Links
- Homepage
- Contact
- Missing Contact
- Pattern for Local Unique Identifiers
-
Local identifiers in Ensembl Plants should match this regular expression:
^\w+(\.\d+)?(\.\d+)?$ - Example Local Unique Identifier
- AT1G73965 Resolve
- Pattern for CURIES
-
Compact URIs (CURIEs) constructed from Ensembl Plants should match this regular expression:
^ensembl\.plant:\w+(\.\d+)?(\.\d+)?$ - Example CURIE
- ensembl.plant:AT1G73965
Metaregistry Ensembl Plants
The metaregistry provides mappings between the Bioregistry and other registries. There are 4 mappings to external registries for this resource with 1 unique external prefixes.
| Registry Name | Registry Metaprefix | External Prefix | Curate |
|---|---|---|---|
| BioContext | biocontext |
ENSEMBL.PLANT
|
|
Identifiers.org
|
miriam |
ensembl.plant
|
|
N2T
|
n2t |
ensembl.plant
|
|
Prefix Commons
|
prefixcommons |
ensembl.plant
|
Providers
A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).
The local unique identifier AT1G73965 is used to demonstrate the providers
available for Ensembl Plants. A guide for curating additional providers can be found
here.
| Name | Metaprefix | URI |
|---|---|---|
| Ensembl Plants | ensembl.plant |
https://plants.ensembl.org/id/AT1G73965 |
| Bioregistry | bioregistry |
https://bioregistry.io/ensembl.plant:AT1G73965 |
| Identifiers.org | miriam |
https://identifiers.org/ensembl.plant:AT1G73965 |
| Name-to-Thing | n2t |
https://n2t.net/ensembl.plant:AT1G73965 |
Extra Providers
Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.
| Code | Name | URL |
|---|---|---|
bio2rdf |
Bio2RDF | http://bio2rdf.org/ensembl.plant:AT1G73965 |