The ENCODE Consortium is integrating multiple technologies and approaches in a collective effort to discover and define the functional elements encoded in the human genome, including genes, transcripts, and transcriptional regulatory regions, together with their attendant chromatin states and DNA methylation patterns.

Prefix

encode

Keywords

epigenetics functional genomics

Links

Homepage

Contact

Idan Gabdank   0000-0001-5025-5886

Pattern for Local Unique Identifiers

Local identifiers in Encyclopedia of DNA Elements should match this regular expression:
^ENC[A-Za-z]{2}[0-9]{3}[A-Za-z]{3}$

Example Local Unique Identifier

ENCSR163RYW   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from Encyclopedia of DNA Elements should match this regular expression:
^encode:ENC[A-Za-z]{2}[0-9]{3}[A-Za-z]{3}$

Example CURIE

encode:ENCSR163RYW

Publications

• 2020 Expanded encyclopaedias of DNA elements in the human and mouse genomes
• 2020 Perspectives on ENCODE
• 2019 The ENCODE Portal as an Epigenomics Resource
• 2020 New developments on the Encyclopedia of DNA Elements (ENCODE) data portal
• 2018 The Encyclopedia of DNA elements (ENCODE): data portal update
• 2017 SnoVault and encodeD: A novel object-based storage system and applications to ENCODE metadata
• 2016 Principles of metadata organization at the ENCODE data coordination center
• 2015 ENCODE data at the ENCODE portal
• 2015 Ontology application and use at the ENCODE DCC
• 2012 ENCODE data in the UCSC Genome Browser: year 5 update
• 2011 ENCODE whole-genome data in the UCSC Genome Browser: update 2012
• 2010 ENCODE whole-genome data in the UCSC genome browser (2011 update)
• 2009 ENCODE whole-genome data in the UCSC Genome Browser
• 2006 The ENCODE Project at UC Santa Cruz
• 2004 The ENCODE (ENCyclopedia Of DNA Elements) Project

The metaregistry provides mappings between the Bioregistry and other registries. There are 6 mappings to external registries for this resource with 3 unique external prefixes.

Providers are various services that resolve CURIEs to URLs. The example CURIE encode:ENCSR163RYW is used to demonstrate the provides available for this resource. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.