The ENCODE Consortium is integrating multiple technologies and approaches in a collective effort to discover and define the functional elements encoded in the human genome, including genes, transcripts, and transcriptional regulatory regions, together with their attendant chromatin states and DNA methylation patterns.

Prefix
encode
Keywords
epigenetics functional genomics
Links
Homepage
Contact
Idan Gabdank   0000-0001-5025-5886
Pattern for Local Unique Identifiers

Local identifiers in Encyclopedia of DNA Elements should match this regular expression:
^ENC[A-Za-z]{2}[0-9]{3}[A-Za-z]{3}$

Example Local Unique Identifier
ENCSR163RYW   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from Encyclopedia of DNA Elements should match this regular expression:
^encode:ENC[A-Za-z]{2}[0-9]{3}[A-Za-z]{3}$

Example CURIE
encode:ENCSR163RYW
Publications
Metaregistry Encyclopedia of DNA Elements

The metaregistry provides mappings between the Bioregistry and other registries. There are 6 mappings to external registries for encode with 3 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext ENCODE
Cellosaurus Registry cellosaurus ENCODE
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.v0hbjs
Identifiers.org Identifiers.org logo miriam encode
Name-to-Thing Name-to-Thing logo n2t encode
Registry of Research Data Repositories re3data r3d100013051
Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE encode:ENCSR163RYW is used to demonstrate the provides available for encode. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
Encyclopedia of DNA Elements encode https://www.encodeproject.org/ENCSR163RYW
Bioregistry bioregistry https://bioregistry.io/encode:ENCSR163RYW
Identifiers.org miriam https://identifiers.org/encode:ENCSR163RYW
Name-to-Thing n2t https://n2t.net/encode:ENCSR163RYW