Registry Mouse Developmental Anatomy Ontology

An ontology for mouse anatomy covering embryonic development and postnatal stages.

Prefix

emapa

Preferred Prefix

EMAPA

Alternative Prefixes

EMAPA_RETIRED

Keywords

anatomy developmental biology obo ontology

Version

2022-07-14

License

CC-BY-4.0

Links

Homepage Repository OBO OWL

Contact

Terry Hayamizu 0000-0002-0956-8634 tfhayamizu

Pattern for Local Unique Identifiers

Local identifiers in Mouse Developmental Anatomy Ontology should match this regular expression:
^\d+$

Example Local Unique Identifier

26753 Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from Mouse Developmental Anatomy Ontology should match this regular expression:
^emapa:\d+$

Example CURIE

emapa:26753

Publications

Metaregistry Mouse Developmental Anatomy Ontology

The metaregistry provides mappings between the Bioregistry and other registries. There are 9 mappings to external registries for emapa with 3 unique external prefixes.

Registry Name	Registry Metaprefix	External Prefix
AberOWL	`aberowl`	`EMAPA`
BARTOC	`bartoc`	`549`
BioContext	`biocontext`	`EMAPA`
BioPortal	`bioportal`	`EMAPA`
FAIRSharing	`fairsharing`	`FAIRsharing.j0fa1d`
GO	`go`	`EMAPA`
OBO Foundry	`obofoundry`	`emapa`
OLS	`ols`	`emapa`
OntoBee	`ontobee`	`EMAPA`

Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE emapa:26753 is used to demonstrate the provides available for emapa. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name	Metaprefix	URI
Mouse Developmental Anatomy Ontology	`emapa`	http://www.informatics.jax.org/vocab/gxd/anatomy/EMAPA:26753
Bioregistry	`bioregistry`	https://bioregistry.io/emapa:26753
OBO Foundry	`obofoundry`	http://purl.obolibrary.org/obo/EMAPA_26753
Ontology Lookup Service	`ols`	https://www.ebi.ac.uk/ols/ontologies/emapa/terms?iri=http://purl.obolibrary.org/obo/EMAPA_26753
BioPortal Prefixes	`bioportal`	https://bioportal.bioontology.org/ontologies/EMAPA/?p=classes&conceptid=http://purl.obolibrary.org/obo/EMAPA_26753

Normalize prefixes. This can be any capitalization or punctuation variant of the synonyms listed below.

>>> import bioregistry as br
>>> br.normalize_prefix("EMAPA_RETIRED")
'emapa'

Get all synonyms:

>>> import bioregistry as br
>>> br.get_synonyms("emapa")
{'EMAPA_RETIRED'}

Get the version:

>>> import bioregistry as br
>>> br.get_version("emapa")
'2022-07-14'

Get the license:

>>> import bioregistry as br
>>> br.get_license("emapa")
'CC-BY-4.0'

Get the homepage:

>>> import bioregistry as br
>>> br.get_homepage("emapa")
'http://www.informatics.jax.org/expression.shtml'

Get the repository:

>>> import bioregistry as br
>>> br.get_repository("emapa")
'https://github.com/obophenotype/mouse-anatomy-ontology'

Get the OBO download link:

>>> import bioregistry as br
>>> br.get_obo_download("emapa")
'http://purl.obolibrary.org/obo/emapa.obo'

Get the OWL download link:

>>> import bioregistry as br
>>> br.get_owl_download("emapa")
'http://purl.obolibrary.org/obo/emapa.owl'

Get the contact's name:

>>> import bioregistry as br
>>> br.get_contact_name("emapa")
'Terry Hayamizu'

Get the contact's email:

>>> import bioregistry as br
>>> br.get_contact_email("emapa")
'Terry.Hayamizu@jax.org'

Get the contact's GitHub handle:

>>> import bioregistry as br
>>> br.get_contact_github("emapa")
'tfhayamizu'

Get the contact's ORCiD identifier:

>>> import bioregistry as br
>>> br.get_contact_orcid("emapa")
'0000-0002-0956-8634'