The ECMDB is an expertly curated database containing extensive metabolomic data and metabolic pathway diagrams about Escherichia coli (strain K12, MG1655). This database includes significant quantities of “original” data compiled by members of the Wishart laboratory as well as additional material derived from hundreds of textbooks, scientific journals, metabolic reconstructions and other electronic databases. Each metabolite is linked to more than 100 data fields describing the compound, its ontology, physical properties, reactions, pathways, references, external links and associated proteins or enzymes.
Local identifiers in E. coli Metabolite Database should match this
Compact URIs (CURIEs) constructed from E. coli Metabolite Database should match
this regular expression:
Providers are various services that resolve CURIEs to URLs. The example CURIE
ecmdb:ECMDB00005 is used to demonstrate the provides available for
ecmdb. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.
|E. coli Metabolite Database||