The ECMDB is an expertly curated database containing extensive metabolomic data and metabolic pathway diagrams about Escherichia coli (strain K12, MG1655). This database includes significant quantities of “original” data compiled by members of the Wishart laboratory as well as additional material derived from hundreds of textbooks, scientific journals, metabolic reconstructions and other electronic databases. Each metabolite is linked to more than 100 data fields describing the compound, its ontology, physical properties, reactions, pathways, references, external links and associated proteins or enzymes.

Prefix

ecmdb

Alternative Prefixes

ECMDB

Links

Homepage

Contact

Missing Contact

Pattern for Local Unique Identifiers

Local identifiers in E. coli Metabolite Database should match this regular expression:
^ECMDB\d+$

Example Local Unique Identifier

ECMDB00005   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from E. coli Metabolite Database should match this regular expression:
^ecmdb:ECMDB\d+$

Example CURIE

ecmdb:ECMDB00005

Contributors

• submitter Charles Tapley Hoyt   0000-0003-4423-4370   cthoyt

Providers are various services that resolve CURIEs to URLs. The example CURIE ecmdb:ECMDB00005 is used to demonstrate the provides available for ecmdb. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.