The ECMDB is an expertly curated database containing extensive metabolomic data and metabolic pathway diagrams about Escherichia coli (strain K12, MG1655). This database includes significant quantities of “original” data compiled by members of the Wishart laboratory as well as additional material derived from hundreds of textbooks, scientific journals, metabolic reconstructions and other electronic databases. Each metabolite is linked to more than 100 data fields describing the compound, its ontology, physical properties, reactions, pathways, references, external links and associated proteins or enzymes.

Alternative Prefixes
Missing Contact
Pattern for Local Unique Identifiers

Local identifiers in E. coli Metabolite Database should match this regular expression:

Example Local Unique Identifier
ECMDB00005   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from E. coli Metabolite Database should match this regular expression:

Example CURIE

A summary of the relations in the Bioregistry schema can be found here.

In Collection
ChEBI Data Sources
Metaregistry E. coli Metabolite Database

The metaregistry provides mappings between the Bioregistry and other registries. There are 1 mappings to external registries for this resource with 1 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
Pathguide Pathguide logo pathguide 386

Providers are various services that resolve CURIEs to URLs. The example CURIE ecmdb:ECMDB00005 is used to demonstrate the provides available for this resource. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
E. coli Metabolite Database ecmdb
Bioregistry bioregistry