Registry Enzyme Nomenclature
The Enzyme Classification contains the recommendations of the Nomenclature Committee of the International Union of Biochemistry and Molecular Biology on the nomenclature and classification of enzyme-catalysed reactions.
- Prefix
eccode- Alternative Prefixes
- EC ec-code EC_CODE ECCODE EC-CODE intenz
- Links
- Homepage
- Contact
- Missing Contact
- Pattern for Local Unique Identifiers
-
Local identifiers in Enzyme Nomenclature should match this regular expression:
^\d{1,2}(((\.\d{1,3}){1,3})|(\.\d+){2}\.n\d{1,3})?$ - Example Local Unique Identifiers
-
1.1.1.1
Resolve
2 Resolve
2.3 Resolve
2.3.1 Resolve
2.3.1.n12 Resolve
3.1.26.n2 Resolve - Pattern for CURIES
-
Compact URIs (CURIEs) constructed from Enzyme Nomenclature should match this regular expression:
^eccode:\d{1,2}(((\.\d{1,3}){1,3})|(\.\d+){2}\.n\d{1,3})?$ - Example CURIEs
-
eccode:1.1.1.1
eccode:2
eccode:2.3
eccode:2.3.1
eccode:2.3.1.n12
eccode:3.1.26.n2
Metaregistry Enzyme Nomenclature
The metaregistry provides mappings between the Bioregistry and other registries. There are
6 mappings to external registries for eccode.
| Registry Name | Metaprefix | External Prefix |
|---|---|---|
FAIRSharing
|
fairsharing |
FAIRsharing.q1fdkc
|
| Gene Ontology Registry | go |
EC
|
Identifiers.org
|
miriam |
ec-code
|
Name-to-Thing
|
n2t |
ec-code
|
| Prefix Commons | prefixcommons |
EC
|
Wikidata Property
|
wikidata |
P591
|
Providers
Providers are various services that resolve CURIEs to URLs. The example CURIE
eccode:1.1.1.1 is used to demonstrate the provides available for
eccode. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.
| Name | Metaprefix | URI |
|---|---|---|
| Enzyme Nomenclature | eccode |
https://www.ebi.ac.uk/intenz/query?cmd=SearchEC&ec=1.1.1.1 |
| Bioregistry | bioregistry |
https://bioregistry.io/eccode:1.1.1.1 |
| Identifiers.org | miriam |
https://identifiers.org/ec-code:1.1.1.1 |
| Name-to-Thing | n2t |
https://n2t.net/ec-code:1.1.1.1 |
Extra Providers
Additional providers curated in the Bioregistry are listed here.
| Code | Name | URL |
|---|---|---|
| CURATOR_REVIEW | KEGG Ligand Database for Enzyme Nomenclature | https://www.genome.jp/dbget-bin/www_bget?ec:1.1.1.1 |
| expenz | ExploreEnz at Trinity College | http://www.enzyme-database.org/query.php?ec=1.1.1.1 |
| enzymeportal | Enzyme Portal through EMBL-EBI | https://www.ebi.ac.uk/enzymeportal/ec/1.1.1.1 |
| expasy | Enzyme nomenclature database, ExPASy (Expert Protein Analysis System) | https://enzyme.expasy.org/EC/1.1.1.1 |