Bioregistry - Dictyostelium discoideum phenotype ontology

Registry Dictyostelium discoideum phenotype ontology

A structured controlled vocabulary of phenotypes of the slime-mould Dictyostelium discoideum.

Prefix

ddpheno

Preferred Prefix

DDPHENO

Version

2020-06-19

Links

Homepage Repository OBO OWL @dictybase

Contact

Petra Fey 0000-0002-4532-2703 pfey03

Pattern for Local Unique Identifiers

Local identifiers in Dictyostelium discoideum phenotype ontology should match this regular expression:
^\d{7}$

Example Local Unique Identifier

0001417 Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from Dictyostelium discoideum phenotype ontology should match this regular expression:
^DDPHENO:\d{7}$

Example CURIE

DDPHENO:0001417

References

Publication dictyBase and the Dicty Stock Center (version 2.0) - a progress report

Metaregistry Dictyostelium discoideum phenotype ontology

The metaregistry provides mappings between the Bioregistry and other registries. There are 6 mappings to external registries for ddpheno.

Registry Name	Metaprefix	External Prefix
BioPortal Prefixes	`bioportal`	`DDPHENO`
FAIRSharing	`fairsharing`	`FAIRsharing.9c1p18`
OBO Foundry	`obofoundry`	`DDPHENO`
Ontology Lookup Service	`ols`	`ddpheno`
OntoBee	`ontobee`	`DDPHENO`
Prefix Commons	`prefixcommons`	`DDPHENO`

Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE ddpheno:0001417 is used to demonstrate the provides available for ddpheno. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name	Metaprefix	URI
Dictyostelium discoideum phenotype ontology	`ddpheno`	http://purl.obolibrary.org/obo/DDPHENO_0001417
Bioregistry	`bioregistry`	https://bioregistry.io/ddpheno:0001417
OBO Foundry	`obofoundry`	http://purl.obolibrary.org/obo/DDPHENO_0001417
Ontology Lookup Service	`ols`	https://www.ebi.ac.uk/ols/ontologies/ddpheno/terms?iri=http://purl.obolibrary.org/obo/DDPHENO_0001417
BioPortal Prefixes	`bioportal`	https://bioportal.bioontology.org/ontologies/DDPHENO/?p=classes&conceptid=http://purl.obolibrary.org/obo/DDPHENO_0001417

Get the version:

>>> import bioregistry as br
>>> br.get_version("ddpheno")
'2020-06-19'

Get the homepage:

>>> import bioregistry as br
>>> br.get_homepage("ddpheno")
'http://dictybase.org/'

Get the repository:

>>> import bioregistry as br
>>> br.get_repository("ddpheno")
'https://github.com/obophenotype/dicty-phenotype-ontology'

Get the OBO download link:

>>> import bioregistry as br
>>> br.get_obo_download("ddpheno")
'https://raw.githubusercontent.com/obophenotype/dicty-phenotype-ontology/master/ddpheno.obo'

Get the OWL download link:

>>> import bioregistry as br
>>> br.get_owl_download("ddpheno")
'http://purl.obolibrary.org/obo/ddpheno.owl'

Get the contact's name:

>>> import bioregistry as br
>>> br.get_contact_name("ddpheno")
'Petra Fey'

Get the contact's email:

>>> import bioregistry as br
>>> br.get_contact_email("ddpheno")
'pfey@northwestern.edu'

Get the contact's GitHub handle:

>>> import bioregistry as br
>>> br.get_contact_github("ddpheno")
'pfey03''

Get the contact's ORCiD identifier:

>>> import bioregistry as br
>>> br.get_contact_orcid("ddpheno")
'0000-0002-4532-2703'