DASHR reports the annotation, expression and evidence for specific RNA processing (cleavage specificity scores/entropy) of human sncRNA genes, precursor and mature sncRNA products across different human tissues and cell types. DASHR integrates information from multiple existing annotation resources for small non-coding RNAs, including microRNAs (miRNAs), Piwi-interacting (piRNAs), small nuclear (snRNAs), nucleolar (snoRNAs), cytoplasmic (scRNAs), transfer (tRNAs), tRNA fragments (tRFs), and ribosomal RNAs (rRNAs). These datasets were obtained from non-diseased human tissues and cell types and were generated for studying or profiling small non-coding RNAs. This collection references RNA records.

Prefix

dashr

Keywords

life science

Links

Homepage

Contact

Li-San Wang   0000-0002-3684-0031

Pattern for Local Unique Identifiers

Local identifiers in Database of small human noncoding RNAs should match this regular expression:
^(hsa-(let|mir)-\w+(-\w+)?)|(piR-\d+)|(chr\w+.tRNA\d+-\w+)|(chr\w+.tRNA\d+-\w+-tRF\d)|((SNORD|SNORA|ACA|HBII|HBI|U)(-)?\w+)|(HY\d\+(-L\d+)?)|((LSU|SSU|5S)(-rRNA_Hsa)?(-L\d+)?)$

Example Local Unique Identifier

hsa-mir-200a   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from Database of small human noncoding RNAs should match this regular expression:
^dashr:(hsa-(let|mir)-\w+(-\w+)?)|(piR-\d+)|(chr\w+.tRNA\d+-\w+)|(chr\w+.tRNA\d+-\w+-tRF\d)|((SNORD|SNORA|ACA|HBII|HBI|U)(-)?\w+)|(HY\d\+(-L\d+)?)|((LSU|SSU|5S)(-rRNA_Hsa)?(-L\d+)?)$

Example CURIE

dashr:hsa-mir-200a

Publications

2015 DASHR: database of small human noncoding RNAs.

The metaregistry provides mappings between the Bioregistry and other registries. There are 4 mappings to external registries for dashr with 2 unique external prefixes.

Providers are various services that resolve CURIEs to URLs. The example CURIE dashr:hsa-mir-200a is used to demonstrate the provides available for dashr. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.