Cube-DB is a database of pre-evaluated results for detection of functional divergence in human/vertebrate protein families. It analyzes comparable taxonomical samples for all paralogues under consideration, storing functional specialisation at the level of residues. The data are presented as a table of per-residue scores, and mapped onto related structures where available.


website down as of 2021-10-04

Missing Contact
Pattern for Local Unique Identifiers

Local identifiers in Cube db should match this regular expression:

Example Local Unique Identifier
AKR   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from Cube db should match this regular expression:

Example CURIE
Metaregistry Cube db

The metaregistry provides mappings between the Bioregistry and other registries. There are 4 mappings to external registries for this resource with 2 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext CUBEDB
Integbio Integbio logo integbio nbdc02094 logo miriam cubedb
N2T Name-to-Thing logo n2t cubedb

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier AKR is used to demonstrate the providers available for Cube db. A guide for curating additional providers can be found here.

Name Metaprefix URI
Cube db cubedb
Bioregistry bioregistry miriam
Name-to-Thing n2t