Cube-DB is a database of pre-evaluated results for detection of functional divergence in human/vertebrate protein families. It analyzes comparable taxonomical samples for all paralogues under consideration, storing functional specialisation at the level of residues. The data are presented as a table of per-residue scores, and mapped onto related structures where available.


website down as of 2021-10-04

Missing Contact
Pattern for Local Unique Identifiers

Local identifiers in Cube db should match this regular expression:

Example Local Unique Identifier
AKR   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from Cube db should match this regular expression:

Example CURIE
Metaregistry Cube db

The metaregistry provides mappings between the Bioregistry and other registries. There are 3 mappings to external registries for this resource with 1 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext CUBEDB logo miriam cubedb
N2T Name-to-Thing logo n2t cubedb

Providers are various services that resolve CURIEs to URLs. The example CURIE cubedb:AKR is used to demonstrate the provides available for this resource. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
Cube db cubedb
Bioregistry bioregistry miriam
Name-to-Thing n2t