Cube-DB is a database of pre-evaluated results for detection of functional divergence in human/vertebrate protein families. It analyzes comparable taxonomical samples for all paralogues under consideration, storing functional specialisation at the level of residues. The data are presented as a table of per-residue scores, and mapped onto related structures where available.

Comment

website down as of 2021-10-04

Prefix

cubedb

Links

Homepage

Contact

Missing Contact

Pattern for Local Unique Identifiers

Local identifiers in Cube db should match this regular expression:
^[A-Za-z_0-9]+$

Example Local Unique Identifier

AKR   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from Cube db should match this regular expression:
^cubedb:[A-Za-z_0-9]+$

Example CURIE

cubedb:AKR

The metaregistry provides mappings between the Bioregistry and other registries. There are 3 mappings to external registries for this resource with 1 unique external prefixes.

Providers are various services that resolve CURIEs to URLs. The example CURIE cubedb:AKR is used to demonstrate the provides available for this resource. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.