Cube-DB is a database of pre-evaluated results for detection of functional divergence in human/vertebrate protein families. It analyzes comparable taxonomical samples for all paralogues under consideration, storing functional specialisation at the level of residues. The data are presented as a table of per-residue scores, and mapped onto related structures where available.
website down as of 2021-10-04
cubedb
Local identifiers in Cube db should match this
regular expression:
^[A-Za-z_0-9]+$
Compact URIs (CURIEs) constructed from Cube db should match
this regular expression:
^cubedb:[A-Za-z_0-9]+$
The metaregistry provides mappings between the Bioregistry and other registries. There are 3 mappings to external registries for this resource with 1 unique external prefixes.
Registry Name | Registry Metaprefix | External Prefix | Curate |
---|---|---|---|
BioContext | biocontext |
CUBEDB
|
|
Identifiers.org
![]() |
miriam |
cubedb
|
|
N2T
![]() |
n2t |
cubedb
|
Providers are various services that resolve CURIEs to URLs. The example CURIE
cubedb:AKR
is used to demonstrate the provides available for
this resource. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.
Name | Metaprefix | URI |
---|---|---|
Cube db | cubedb |
http://epsf.bmad.bii.a-star.edu.sg/cube/db/data/AKR/ |
Bioregistry | bioregistry |
https://bioregistry.io/cubedb:AKR |
Identifiers.org | miriam |
https://identifiers.org/cubedb:AKR |
Name-to-Thing | n2t |
https://n2t.net/cubedb:AKR |