CryptoDB is one of the databases that can be accessed through the EuPathDB (; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera.

functional genomics genome genomics parasitology
Homepage @VEuPathDB
Jessica Kissinger   0000-0003-4446-6200
Pattern for Local Unique Identifiers

Local identifiers in CryptoDB should match this regular expression:

Example Local Unique Identifier
cgd7_230   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from CryptoDB should match this regular expression:

Example CURIE
Metaregistry CryptoDB

The metaregistry provides mappings between the Bioregistry and other registries. There are 6 mappings to external registries for cryptodb with 3 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext CRYPTODB
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.t3nprm logo miriam cryptodb
Name-to-Thing Name-to-Thing logo n2t cryptodb
Prefix Commons prefixcommons cryptodb
Registry of Research Data Repositories re3data r3d100012265

Providers are various services that resolve CURIEs to URLs. The example CURIE cryptodb:cgd7_230 is used to demonstrate the provides available for cryptodb. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
CryptoDB cryptodb
Bioregistry bioregistry miriam
Name-to-Thing n2t