CryptoDB is one of the databases that can be accessed through the EuPathDB (; formerly ApiDB) portal, covering eukaryotic pathogens of the genera Cryptosporidium, Giardia, Leishmania, Neospora, Plasmodium, Toxoplasma, Trichomonas and Trypanosoma. While each of these groups is supported by a taxon-specific database built upon the same infrastructure, the EuPathDB portal offers an entry point to all these resources, and the opportunity to leverage orthology for searches across genera.

functional genomics genome genomics parasitology
Jessica Kissinger   0000-0003-4446-6200
Pattern for Local Unique Identifiers

Local identifiers in CryptoDB should match this regular expression:

Example Local Unique Identifier
cgd7_230   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from CryptoDB should match this regular expression:

Example CURIE
Metaregistry CryptoDB

The metaregistry provides mappings between the Bioregistry and other registries. There are 7 mappings to external registries for this resource with 4 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext CRYPTODB
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.t3nprm
Integbio Integbio logo integbio nbdc01780 logo miriam cryptodb
N2T Name-to-Thing logo n2t cryptodb
Prefix Commons Prefix Commons logo prefixcommons cryptodb
re3data Registry of Research Data Repositories logo re3data r3d100012265

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier cgd7_230 is used to demonstrate the providers available for CryptoDB. A guide for curating additional providers can be found here.

Name Metaprefix URI
CryptoDB cryptodb
Bioregistry bioregistry miriam
Name-to-Thing n2t
Extra Providers

Additional providers curated in the Bioregistry are listed here. These are typically inherited from or Prefix Commons, and need extra curation.

Code Name URL
bio2rdf Bio2RDF