Repeated CRISPR ("clustered regularly interspaced short palindromic repeats") elements found in archaebacteria and eubacteria are believed to defend against viral infection, potentially targeting invading DNA for degradation. CRISPRdb is a database that stores information on CRISPRs that are automatically extracted from newly released genome sequence data.

Prefix
crisprdb
Keywords
life science
Links
Homepage
Contact
Christine Pourcel   0000-0002-8951-466X
Pattern for Local Unique Identifiers

Local identifiers in CRISPRdb should match this regular expression:
^[0-9]+$

Example Local Unique Identifier
551115   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from CRISPRdb should match this regular expression:
^crisprdb:[0-9]+$

Example CURIE
crisprdb:551115
Publications
Metaregistry CRISPRdb

The metaregistry provides mappings between the Bioregistry and other registries. There are 4 mappings to external registries for crisprdb with 2 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext CRISPRDB
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.7sfedh
Identifiers.org Identifiers.org logo miriam crisprdb
Name-to-Thing Name-to-Thing logo n2t crisprdb
Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE crisprdb:551115 is used to demonstrate the provides available for crisprdb. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
CRISPRdb crisprdb http://crispr.i2bc.paris-saclay.fr/cgi-bin/crispr/SpecieProperties_db.cgi?Taxon_id[]=551115
Bioregistry bioregistry https://bioregistry.io/crisprdb:551115
Identifiers.org miriam https://identifiers.org/crisprdb:551115
Name-to-Thing n2t https://n2t.net/crisprdb:551115