Registry COVID-19 Surveillance Ontology

Curated contextual database gathering samples related to SARS-CoV-2 virus and covid-19 disease.

Prefix: covid19
Keywords: ontology
Links: Homepage OWL
Contact: Dylan McGagh 0000-0002-6772-2775
Pattern for Local Unique Identifiers: Local identifiers in COVID-19 Surveillance Ontology should match this regular expression:
^\w+_COVID19_[-\w]+$
Example Local Unique Identifier: SFB_COVID19_MW286762 Resolve
Pattern for CURIES: Compact URIs (CURIEs) constructed from COVID-19 Surveillance Ontology should match this regular expression:
^covid19:\w+_COVID19_[-\w]+$
Example CURIE: covid19:SFB_COVID19_MW286762

Metaregistry COVID-19 Surveillance Ontology

The metaregistry provides mappings between the Bioregistry and other registries. There are 3 mappings to external registries for this resource with 1 unique external prefixes.

Registry Name	Registry Metaprefix	External Prefix
AberOWL	`aberowl`	`COVID19`
BioPortal	`bioportal`	`COVID19`
Identifiers.org	`miriam`	`covid19`

Providers

Suggest

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier SFB_COVID19_MW286762 is used to demonstrate the providers available for COVID-19 Surveillance Ontology. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.

Name	Metaprefix	URI
COVID-19 Surveillance Ontology	`covid19`	https://covid19.sfb.uit.no/api/records/SFB_COVID19_MW286762
Bioregistry	`bioregistry`	https://bioregistry.io/covid19:SFB_COVID19_MW286762
Identifiers.org	`miriam`	https://identifiers.org/covid19:SFB_COVID19_MW286762

This name annotation was originally annotated in BioPortal Prefixes and is redistributed under the See https://github.com/biopragmatics/bioregistry/issues/337 license.

Get the name:

>>> import bioregistry as br
>>> br.get_name("covid19")
'COVID-19 Surveillance Ontology'

Get the homepage:

>>> import bioregistry as br
>>> br.get_homepage("covid19")
'https://covid19.sfb.uit.no'

Get the OWL download link:

>>> import bioregistry as br
>>> br.get_owl_download("covid19")
'http://aber-owl.net/media/ontologies/COVID19/3/covid19.owl'

Get the contact's name:

>>> import bioregistry as br
>>> br.get_contact_name("covid19")
'Dylan McGagh'

Get the contact's email:

>>> import bioregistry as br
>>> br.get_contact_email("covid19")
'dylan.mcgagh@magd.ox.ac.uk'

Get the contact's ORCiD identifier:

>>> import bioregistry as br
>>> br.get_contact_orcid("covid19")
'0000-0002-6772-2775'