ClassyFire is a web-based application for automated structural classification of chemical entities. This application uses a rule-based approach that relies on a comprehensible, comprehensive, and computable chemical taxonomy. ClassyFire provides a hierarchical chemical classification of chemical entities (mostly small molecules and short peptide sequences), as well as a structure-based textual description, based on a chemical taxonomy named ChemOnt, which covers 4825 chemical classes of organic and inorganic compounds. Moreover, ClassyFire allows for text-based search via its web interface. It can be accessed via the web interface or via the ClassyFire API.
There's a mismatch between the MIRIAM URI format string, which has a C prefix in front of class identifiers and the ontology which does not use them.
classyfire
Local identifiers in ClassyFire should match this
regular expression:
^\d{7}$
Compact URIs (CURIEs) constructed from ClassyFire should match
this regular expression:
^classyfire:\d{7}$
C
.
Therefore, you may see local unique identifiers for this resource that look like
C0004828
(instead of the canonical form 0004828
) and CURIEs for this resource that look like
classyfire:C0004828
(instead of the canonical form classyfire:0004828
).
The Bioregistry will automatically strip off the banana when standardizing local unique identifiers and CURIEs.
The metaregistry provides mappings between the Bioregistry and other registries. There are 1 mappings to external registries for this resource with 1 unique external prefixes.
Registry Name | Registry Metaprefix | External Prefix | Curate |
---|---|---|---|
Identifiers.org
![]() |
miriam |
classyfire
|
Providers are various services that resolve CURIEs to URLs. The example CURIE
classyfire:0004828
is used to demonstrate the provides available for
this resource. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.
Name | Metaprefix | URI |
---|---|---|
ClassyFire | classyfire |
http://classyfire.wishartlab.com/tax_nodes/C0004828 |
Bioregistry | bioregistry |
https://bioregistry.io/classyfire:0004828 |
Identifiers.org | miriam |
https://identifiers.org/classyfire:C0004828 |