Registry Coronavirus Infectious Disease Ontology

The Ontology of Coronavirus Infectious Disease (CIDO) is a community-driven open-source biomedical ontology in the area of coronavirus infectious disease. The CIDO is developed to provide standardized human- and computer-interpretable annotation and representation of various coronavirus infectious diseases, including their etiology, transmission, pathogenesis, diagnosis, prevention, and treatment.

Prefix

cido

Preferred Prefix

CIDO

Keywords

bioinformatics covid-19 disease drug drug discovery drug interaction drug repositioning epidemiology infection obo ontology virology

Version

2024-02-16

License

CC-BY-4.0

Links

Homepage Repository OWL

Contact

Yongqun Oliver He 0000-0001-9189-9661 yongqunh

Pattern for Local Unique Identifiers

Local identifiers in Coronavirus Infectious Disease Ontology should match this regular expression:
^\d{7}$

Example Local Unique Identifier

0000005 Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from Coronavirus Infectious Disease Ontology should match this regular expression:
^CIDO:\d{7}$

Example CURIE

CIDO:0000005

Publications

Metaregistry Coronavirus Infectious Disease Ontology

The metaregistry provides mappings between the Bioregistry and other registries. There are 6 mappings to external registries for this resource with 2 unique external prefixes.

Registry Name	Registry Metaprefix	External Prefix
AberOWL	`aberowl`	`CIDO`
BioPortal	`bioportal`	`CIDO`
FAIRSharing	`fairsharing`	`FAIRsharing.aVmpKl`
OBO Foundry	`obofoundry`	`cido`
OLS	`ols`	`cido`
OntoBee	`ontobee`	`CIDO`

RDF Information

When using this resource in RDF, the following URI format should be used:

http://purl.obolibrary.org/obo/CIDO_$1

Providers

Suggest

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier 0000005 is used to demonstrate the providers available for Coronavirus Infectious Disease Ontology. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.

Name	Metaprefix	URI
Coronavirus Infectious Disease Ontology	`cido`	http://purl.obolibrary.org/obo/CIDO_0000005
Coronavirus Infectious Disease Ontology (RDF)	`rdf`	http://purl.obolibrary.org/obo/CIDO_0000005
Bioregistry	`bioregistry`	https://bioregistry.io/cido:0000005
OBO Foundry	`obofoundry`	http://purl.obolibrary.org/obo/CIDO_0000005
Ontology Lookup Service	`ols`	https://www.ebi.ac.uk/ols4/ontologies/cido/terms?iri=http://purl.obolibrary.org/obo/CIDO_0000005
BioPortal Prefixes	`bioportal`	https://bioportal.bioontology.org/ontologies/CIDO/?p=classes&conceptid=http://purl.obolibrary.org/obo/CIDO_0000005

Get the version:

>>> import bioregistry as br
>>> br.get_version("cido")
'2024-02-16'

This name annotation was originally annotated in OBO Foundry and is redistributed under the CC0 license.

Get the name:

>>> import bioregistry as br
>>> br.get_name("cido")
'Coronavirus Infectious Disease Ontology'

Get the license:

>>> import bioregistry as br
>>> br.get_license("cido")
'CC-BY-4.0'

Get the homepage:

>>> import bioregistry as br
>>> br.get_homepage("cido")
'https://github.com/cido-ontology/cido'

Get the repository:

>>> import bioregistry as br
>>> br.get_repository("cido")
'https://github.com/cido-ontology/cido'

Get the OWL download link:

>>> import bioregistry as br
>>> br.get_owl_download("cido")
'https://github.com/CIDO-ontology/cido/raw/master/cido.owl'

Get the contact's name:

>>> import bioregistry as br
>>> br.get_contact_name("cido")
'Yongqun Oliver He'

Get the contact's email:

>>> import bioregistry as br
>>> br.get_contact_email("cido")
'yongqunh@med.umich.edu'

Get the contact's GitHub handle:

>>> import bioregistry as br
>>> br.get_contact_github("cido")
'yongqunh'

Get the contact's ORCiD identifier:

>>> import bioregistry as br
>>> br.get_contact_orcid("cido")
'0000-0001-9189-9661'