CharProt is a database of biochemically characterized proteins designed to support automated annotation pipelines. Entries are annotated with gene name, symbol and various controlled vocabulary terms, including Gene Ontology terms, Enzyme Commission number and TransportDB accession.

Prefix
charprot
Links
Homepage
Contact
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Pattern for Local Unique Identifiers

Local identifiers in CharProt should match this regular expression:
^CH_\d+$

Example Local Unique Identifier
CH_001923   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from CharProt should match this regular expression:
^charprot:CH_\d+$

Example CURIE
charprot:CH_001923
Metaregistry

The metaregistry provides mappings between the Bioregistry and other registries. There are 3 mappings to external registries for charprot.

Registry Name Metaprefix External Prefix
Identifiers.org miriam charprot
Name-to-Thing n2t charprot
Prefix Commons prefixcommons CHARPROT
Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE charprot:CH_001923 is used to demonstrate the provides available for charprot. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
CharProt charprot http://www.jcvi.org/charprotdb/index.cgi/view/CH_001923
Bioregistry bioregistry https://bioregistry.io/charprot:CH_001923
Identifiers.org miriam https://identifiers.org/charprot:CH_001923
Name-to-Thing n2t https://n2t.net/charprot:CH_001923