Registry The cBioPortal for Cancer Genomics

The cBioPortal for Cancer Genomics provides visualization, analysis and download of large-scale cancer genomics data sets.

Prefix

cbioportal

Keywords

biomedical science genomics preclinical studies proteomics

Links

Homepage Repository

Contact

Jianjiong Gao 0000-0002-5739-1781 jjgao

Pattern for Local Unique Identifiers

Local identifiers in The cBioPortal for Cancer Genomics should match this regular expression:
^[a-z0-9\_]+$

Example Local Unique Identifier

laml_tcga_pub Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from The cBioPortal for Cancer Genomics should match this regular expression:
^cbioportal:[a-z0-9\_]+$

Example CURIE

cbioportal:laml_tcga_pub

Publications

Ontology

A summary of the relations in the Bioregistry schema can be found here.

In Collection: Synapse.org external links

Metaregistry The cBioPortal for Cancer Genomics

The metaregistry provides mappings between the Bioregistry and other registries. There are 3 mappings to external registries for this resource with 2 unique external prefixes.

Registry Name	Registry Metaprefix	External Prefix
FAIRSharing	`fairsharing`	`FAIRsharing.6L6MjA`
Identifiers.org	`miriam`	`cbioportal`
N2T	`n2t`	`cbioportal`

Providers

Suggest

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier laml_tcga_pub is used to demonstrate the providers available for The cBioPortal for Cancer Genomics. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.

Name	Metaprefix	URI
The cBioPortal for Cancer Genomics	`cbioportal`	https://www.cbioportal.org/study/summary?id=laml_tcga_pub
Bioregistry	`bioregistry`	https://bioregistry.io/cbioportal:laml_tcga_pub
Identifiers.org	`miriam`	https://identifiers.org/cbioportal:laml_tcga_pub
Name-to-Thing	`n2t`	https://n2t.net/cbioportal:laml_tcga_pub

This name annotation was originally annotated in Identifiers.org and is redistributed under the CC BY 4.0 license.

Get the name:

>>> import bioregistry as br
>>> br.get_name("cbioportal")
'The cBioPortal for Cancer Genomics'

Get the homepage:

>>> import bioregistry as br
>>> br.get_homepage("cbioportal")
'http://www.cbioportal.org'

Get the repository:

>>> import bioregistry as br
>>> br.get_repository("cbioportal")
'https://github.com/cBioPortal/cbioportal'

Get the contact's name:

>>> import bioregistry as br
>>> br.get_contact_name("cbioportal")
'Jianjiong Gao'

Get the contact's email:

>>> import bioregistry as br
>>> br.get_contact_email("cbioportal")
'gaoj@mskcc.org'

Get the contact's GitHub handle:

>>> import bioregistry as br
>>> br.get_contact_github("cbioportal")
'jjgao'

Get the contact's ORCiD identifier:

>>> import bioregistry as br
>>> br.get_contact_orcid("cbioportal")
'0000-0002-5739-1781'