The CATH database is a hierarchical domain classification of protein structures in the Protein Data Bank. Protein structures are classified using a combination of automated and manual procedures. There are four major levels in this hierarchy; Class (secondary structure classification, e.g. mostly alpha), Architecture (classification based on overall shape), Topology (fold family) and Homologous superfamily (protein domains which are thought to share a common ancestor). This colelction is concerned with CATH domains.
cath.domain
Local identifiers in CATH domain should match this
regular expression:
^\w+$
Compact URIs (CURIEs) constructed from CATH domain should match
this regular expression:
^cath\.domain:\w+$
The metaregistry provides mappings between the Bioregistry and other registries. There are 4 mappings to external registries for this resource with 2 unique external prefixes.
Registry Name | Registry Metaprefix | External Prefix | Curate |
---|---|---|---|
BioContext | biocontext |
CATH.DOMAIN
|
|
EDAM | edam |
1040
|
|
Identifiers.org | miriam |
cath.domain
|
|
N2T | n2t |
cath.domain
|
A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).
The local unique identifier 1cukA01
is used to demonstrate the providers
available for CATH domain. A guide for curating additional providers can be found
here.
Name | Metaprefix | URI |
---|---|---|
CATH domain | cath.domain |
http://www.cathdb.info/domain/1cukA01 |
Bioregistry | bioregistry |
https://bioregistry.io/cath.domain:1cukA01 |
Identifiers.org | miriam |
https://identifiers.org/cath.domain:1cukA01 |
Name-to-Thing | n2t |
https://n2t.net/cath.domain:1cukA01 |