This is a code repository for the SIB - Swiss Institute of Bioinformatics CALIPHO group neXtProt project, which is a comprehensive human-centric discovery platform, that offers a integration of and navigation through protein-related data. CALIPHO is an interdisciplinary team which aims to use a variety of methodologies to help uncover the function of uncharacterized human proteins.
caloha
Local identifiers in CALIPHO Group Ontology of Human Anatomy should match this
regular expression:
^TS-\d+$
Compact URIs (CURIEs) constructed from CALIPHO Group Ontology of Human Anatomy should match
this regular expression:
^caloha:TS-\d+$
A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).
The local unique identifier TS-0001 is used to demonstrate the providers
available for CALIPHO Group Ontology of Human Anatomy. Some providers may use a different example, which is displayed in the table below.
A guide for curating additional providers can be found
here.
| Name | Metaprefix | URI |
|---|---|---|
| CALIPHO Group Ontology of Human Anatomy | caloha |
https://www.nextprot.org/term/TS-0001 |
| Bioregistry | bioregistry |
https://bioregistry.io/caloha:TS-0001 |
Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.
| Code | Name | URL |
|---|---|---|
biopragmatics |
Biopragmatics Browser | https://biopragmatics.github.io/providers/caloha/TS-0001 |