Registry BioProject Has Canonical
BioProject provides an organizational framework to access metadata about research projects and the data from the projects that are deposited into different databases. It provides information about a project’s scope, material, objectives, funding source and general relevance categories.
- Prefix
bioproject- Keywords
- life science
- Links
- Homepage
- Contact
- Missing Contact
- Pattern for Local Unique Identifiers
-
Local identifiers in BioProject should match this regular expression:
^PRJ[DEN][A-Z]\d+$ - Example Local Unique Identifier
- PRJDB3 Resolve
- Pattern for CURIES
-
Compact URIs (CURIEs) constructed from BioProject should match this regular expression:
^bioproject:PRJ[DEN][A-Z]\d+$ - Example CURIE
- bioproject:PRJDB3
- Publications
- 2011 BioProject and BioSample databases at NCBI: facilitating capture and organization of metadata.
Metaregistry BioProject
The metaregistry provides mappings between the Bioregistry and other registries. There are
5 mappings to external registries for bioproject with
3 unique external prefixes.
| Registry Name | Registry Metaprefix | External Prefix | Curate |
|---|---|---|---|
| BioContext | biocontext |
BIOPROJECT
|
|
FAIRSharing
|
fairsharing |
FAIRsharing.aqhv1y
|
|
Identifiers.org
|
miriam |
bioproject
|
|
N2T
|
n2t |
bioproject
|
|
re3data
|
re3data |
r3d100013330
|
Providers
Providers are various services that resolve CURIEs to URLs. The example CURIE
bioproject:PRJDB3
is used to demonstrate the provides available for
bioproject. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.
Extra Providers
Additional providers curated in the Bioregistry are listed here.
| Code | Name | URL |
|---|---|---|
ebi |
BioProject at European Nucleotide Archive (ENA) | https://www.ebi.ac.uk/ena/browser/view/PRJDB3 |
ncbi |
BioProject at NCBI | https://www.ncbi.nlm.nih.gov/bioproject?term=PRJDB3 |