BioPortal is an open repository of biomedical ontologies that provides access via Web services and Web browsers to ontologies developed in OWL, RDF, OBO format and Protégé frames. BioPortal functionality includes the ability to browse, search and visualize ontologies.
bioportal
Local identifiers in BioPortal should match this
regular expression:
^(\d+)|(\w+)$
Compact URIs (CURIEs) constructed from BioPortal should match
this regular expression:
^bioportal:(\d+)|(\w+)$
The metaregistry provides mappings between the Bioregistry and other registries. There are
6 mappings to external registries for bioportal
with
3 unique external prefixes.
Registry Name | Registry Metaprefix | External Prefix | Curate |
---|---|---|---|
BioContext | biocontext |
BIOPORTAL
|
|
FAIRSharing
|
fairsharing |
FAIRsharing.4m97ah
|
|
Identifiers.org
![]() |
miriam |
bioportal
|
|
Name-to-Thing
![]() |
n2t |
bioportal
|
|
Prefix Commons | prefixcommons |
bioportal
|
|
Registry of Research Data Repositories | re3data |
r3d100012344
|
Providers are various services that resolve CURIEs to URLs. The example CURIE
bioportal:1046
is used to demonstrate the provides available for
bioportal
. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.
Name | Metaprefix | URI |
---|---|---|
BioPortal | bioportal |
http://bioportal.bioontology.org/ontologies/1046 |
Bioregistry | bioregistry |
https://bioregistry.io/bioportal:1046 |
Identifiers.org | miriam |
https://identifiers.org/bioportal:1046 |
Name-to-Thing | n2t |
https://n2t.net/bioportal:1046 |