BioPortal is an open repository of biomedical ontologies that provides access via Web services and Web browsers to ontologies developed in OWL, RDF, OBO format and Protégé frames. BioPortal functionality includes the ability to browse, search and visualize ontologies.

Prefix
bioportal
Keywords
life science ontology ontology and terminology
Links
Homepage Repository @bioontology
Contact
John Graybeal   0000-0001-6875-5360
Pattern for Local Unique Identifiers

Local identifiers in BioPortal should match this regular expression:
^(\d+)|(\w+)$

Example Local Unique Identifiers
1046   Resolve
SEPIO   Resolve
pseudo   Resolve
FBBi   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from BioPortal should match this regular expression:
^bioportal:(\d+)|(\w+)$

Example CURIEs
bioportal:1046
bioportal:SEPIO
bioportal:pseudo
bioportal:FBBi
Publications
Metaregistry BioPortal

The metaregistry provides mappings between the Bioregistry and other registries. There are 6 mappings to external registries for bioportal with 3 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext BIOPORTAL
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.4m97ah
Identifiers.org Identifiers.org logo miriam bioportal
Name-to-Thing Name-to-Thing logo n2t bioportal
Prefix Commons prefixcommons bioportal
Registry of Research Data Repositories re3data r3d100012344
Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE bioportal:1046 is used to demonstrate the provides available for bioportal. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
BioPortal bioportal http://bioportal.bioontology.org/ontologies/1046
Bioregistry bioregistry https://bioregistry.io/bioportal:1046
Identifiers.org miriam https://identifiers.org/bioportal:1046
Name-to-Thing n2t https://n2t.net/bioportal:1046