Registry BioPortal
BioPortal is an open repository of biomedical ontologies that provides access via Web services and Web browsers to ontologies developed in OWL, RDF, OBO format and Protégé frames. BioPortal functionality includes the ability to browse, search and visualize ontologies.
- Prefix
bioportal- Links
- Homepage
- Contact
- Missing Contact
- Pattern for Local Unique Identifiers
-
Local identifiers in BioPortal should match this regular expression:
^\d+$ - Example Local Unique Identifier
- 1046 Resolve
- Pattern for CURIES
-
Compact URIs (CURIEs) constructed from BioPortal should match this regular expression:
^bioportal:\d+$ - Example CURIE
- bioportal:1046
- Publications
- 2009 BioPortal: ontologies and integrated data resources at the click of a mouse.
Metaregistry BioPortal
The metaregistry provides mappings between the Bioregistry and other registries. There are
6 mappings to external registries for bioportal with
3 unique external prefixes.
| Registry Name | Metaprefix | External Prefix |
|---|---|---|
| BioContext | biocontext |
BIOPORTAL
|
FAIRSharing
|
fairsharing |
FAIRsharing.4m97ah
|
Identifiers.org
|
miriam |
bioportal
|
Name-to-Thing
|
n2t |
bioportal
|
| Prefix Commons | prefixcommons |
bioportal
|
| Registry of Research Data Repositories | re3data |
r3d100012344
|
Providers
Providers are various services that resolve CURIEs to URLs. The example CURIE
bioportal:1046
is used to demonstrate the provides available for
bioportal. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.
| Name | Metaprefix | URI |
|---|---|---|
| BioPortal | bioportal |
http://bioportal.bioontology.org/ontologies/1046 |
| Bioregistry | bioregistry |
https://bioregistry.io/bioportal:1046 |
| Identifiers.org | miriam |
https://identifiers.org/bioportal:1046 |
| Name-to-Thing | n2t |
https://n2t.net/bioportal:1046 |