Registry Kinetic Simulation Algorithm Ontology

The Kinetic Simulation Algorithm Ontology (KiSAO) is an ontology that describes simulation algorithms and methods used for biological kinetic models, and the relationships between them. This provides a means to unambiguously refer to simulation algorithms when describing a simulation experiment.

Preferred Prefix
Alternative Prefixes
biomodels.kisao kisao
bioinformatics computer science obo ontology
Artistic License 2.0
Homepage Repository OWL
Jonathan Karr   0000-0002-2605-5080   jonrkarr
Pattern for Local Unique Identifiers

Local identifiers in Kinetic Simulation Algorithm Ontology should match this regular expression:

Example Local Unique Identifier
0000057   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from Kinetic Simulation Algorithm Ontology should match this regular expression:

Example CURIE
MIRIAM Namespace Embedded in LUI
The legacy MIRIAM standard for generating CURIEs with this resource includes the namespaceEmbeddedInLUI as true. The actual part that gets prefixed before the local unique identifier regex, otherwise known as the banana, is KISAO_. Therefore, you might see local unique identifiers written out as CURIEs.
2011 Controlled vocabularies and semantics in systems biology.
Metaregistry Kinetic Simulation Algorithm Ontology

The metaregistry provides mappings between the Bioregistry and other registries. There are 10 mappings to external registries for biomodels.kisao with 3 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
AberOWL aberowl KISAO
BioContext biocontext KISAO
BioPortal Prefixes bioportal KISAO
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.jcg19w logo miriam biomodels.kisao
Name-to-Thing Name-to-Thing logo n2t biomodels.kisao
OBO Foundry OBO Foundry logo obofoundry kisao
Ontology Lookup Service Ontology Lookup Service logo ols kisao
OntoBee ontobee KISAO
Prefix Commons prefixcommons kisao
Extra Providers

Additional providers curated in the Bioregistry are listed here.

Code Name URL
legacy Legacy Biomodels URL