The Kinetic Simulation Algorithm Ontology (KiSAO) is an ontology that describes simulation algorithms and methods used for biological kinetic models, and the relationships between them. This provides a means to unambiguously refer to simulation algorithms when describing a simulation experiment.
biomodels.kisao
biomodels.kisao
Local identifiers in Kinetic Simulation Algorithm Ontology should match this
regular expression:
^\d+$
Compact URIs (CURIEs) constructed from Kinetic Simulation Algorithm Ontology should match
this regular expression:
^biomodels\.kisao:\d+$
namespaceEmbeddedInLUI
as true.
This means that you may see local unique identifiers that include a redundant prefix and delimiter (also known
as a banana)
and therefore look like a CURIE. For Kinetic Simulation Algorithm Ontology, the banana looks like
KISAO_
.
Therefore, you may see local unique identifiers for this resource that look like
KISAO_0000057
(instead of the canonical form 0000057
) and CURIEs for this resource that look like
biomodels.kisao:KISAO_0000057
(instead of the canonical form biomodels.kisao:0000057
).
The Bioregistry will automatically strip off the banana when standardizing local unique identifiers and CURIEs.
The metaregistry provides mappings between the Bioregistry and other registries. There are 10 mappings to external registries for this resource with 3 unique external prefixes.
Registry Name | Registry Metaprefix | External Prefix | Curate |
---|---|---|---|
AberOWL
![]() |
aberowl |
KISAO
|
|
BioContext | biocontext |
KISAO
|
|
BioPortal
![]() |
bioportal |
KISAO
|
|
FAIRSharing
|
fairsharing |
FAIRsharing.jcg19w
|
|
Identifiers.org
![]() |
miriam |
biomodels.kisao
|
|
N2T
![]() |
n2t |
biomodels.kisao
|
|
OBO Foundry
![]() |
obofoundry |
kisao
|
|
OLS
![]() |
ols |
kisao
|
|
OntoBee
![]() |
ontobee |
KISAO
|
|
Prefix Commons
|
prefixcommons |
kisao
|
When using this resource in RDF, the following URI format should be used:
http://purl.obolibrary.org/obo/KISAO_$1
Providers are various services that resolve CURIEs to URLs. The example CURIE
biomodels.kisao:0000057
is used to demonstrate the provides available for
this resource. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.
Additional providers curated in the Bioregistry are listed here.
Code | Name | URL |
---|---|---|
bio2rdf |
Bio2RDF | http://bio2rdf.org/kisao:0000057 |
legacy |
Legacy Biomodels URL | https://www.biomodels.net/kisao/KISAO#KISAO_0000057 |