BioModels Database is a data resource that allows biologists to store, search and retrieve published mathematical models of biological interests.
biomodels.db
Local identifiers in BioModels Database should match this
regular expression:
^((BIOMD|MODEL)\d{10})|(BMID\d{12})$
Compact URIs (CURIEs) constructed from BioModels Database should match
this regular expression:
^biomodels\.db:((BIOMD|MODEL)\d{10})|(BMID\d{12})$
The metaregistry provides mappings between the Bioregistry and other registries. There are
5 mappings to external registries for biomodels.db
with
3 unique external prefixes.
Registry Name | Registry Metaprefix | External Prefix | Curate |
---|---|---|---|
BioContext | biocontext |
BIOMODELS.DB
|
|
Gene Ontology Registry | go |
BIOMD
|
|
Identifiers.org
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miriam |
biomodels.db
|
|
Name-to-Thing
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n2t |
biomodels.db
|
|
Prefix Commons | prefixcommons |
biomodels
|
Providers are various services that resolve CURIEs to URLs. The example CURIE
biomodels.db:BIOMD0000000048
is used to demonstrate the provides available for
biomodels.db
. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.
Name | Metaprefix | URI |
---|---|---|
BioModels Database | biomodels.db |
https://www.ebi.ac.uk/biomodels/BIOMD0000000048 |
Bioregistry | bioregistry |
https://bioregistry.io/biomodels.db:BIOMD0000000048 |
Identifiers.org | miriam |
https://identifiers.org/biomodels.db:BIOMD0000000048 |
Name-to-Thing | n2t |
https://n2t.net/biomodels.db:BIOMD0000000048 |
None | CURATOR_REVIEW |
http://biomodels.caltech.edu/BIOMD0000000048 |
None | omicsdi |
https://www.omicsdi.org/dataset/biomodels/BIOMD0000000048 |
Additional providers curated in the Bioregistry are listed here.
Code | Name | URL |
---|---|---|
CURATOR_REVIEW |
Caltech mirror | http://biomodels.caltech.edu/BIOMD0000000048 |
omicsdi |
BioModels through OmicsDI | https://www.omicsdi.org/dataset/biomodels/BIOMD0000000048 |