Registry BioModels Database
BioModels Database is a data resource that allows biologists to store, search and retrieve published mathematical models of biological interests.
- Prefix
biomodels.db- Alternative Prefixes
- BIOMD
- Links
- Homepage
- Contact
- Missing Contact
- Pattern for Local Unique Identifiers
-
Local identifiers in BioModels Database should match this regular expression:
^((BIOMD|MODEL)\d{10})|(BMID\d{12})$ - Example Local Unique Identifier
- BIOMD0000000048 Resolve
- Pattern for CURIES
-
Compact URIs (CURIEs) constructed from BioModels Database should match this regular expression:
^biomodels\.db:((BIOMD|MODEL)\d{10})|(BMID\d{12})$ - Example CURIE
- biomodels.db:BIOMD0000000048
- Publications
- 2006 BioModels Database: a free, centralized database of curated, published, quantitative kinetic models of biochemical and cellular systems.
Metaregistry BioModels Database
The metaregistry provides mappings between the Bioregistry and other registries. There are
5 mappings to external registries for biomodels.db with
3 unique external prefixes.
| Registry Name | Metaprefix | External Prefix |
|---|---|---|
| BioContext | biocontext |
BIOMODELS.DB
|
| Gene Ontology Registry | go |
BIOMD
|
Identifiers.org
|
miriam |
biomodels.db
|
Name-to-Thing
|
n2t |
biomodels.db
|
| Prefix Commons | prefixcommons |
biomodels
|
Providers
Providers are various services that resolve CURIEs to URLs. The example CURIE
biomodels.db:BIOMD0000000048
is used to demonstrate the provides available for
biomodels.db. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.
| Name | Metaprefix | URI |
|---|---|---|
| BioModels Database | biomodels.db |
https://www.ebi.ac.uk/biomodels/BIOMD0000000048 |
| Bioregistry | bioregistry |
https://bioregistry.io/biomodels.db:BIOMD0000000048 |
| Identifiers.org | miriam |
https://identifiers.org/biomodels.db:BIOMD0000000048 |
| Name-to-Thing | n2t |
https://n2t.net/biomodels.db:BIOMD0000000048 |
| None | CURATOR_REVIEW |
http://biomodels.caltech.edu/BIOMD0000000048 |
| None | omicsdi |
https://www.omicsdi.org/dataset/biomodels/BIOMD0000000048 |
Extra Providers
Additional providers curated in the Bioregistry are listed here.
| Code | Name | URL |
|---|---|---|
CURATOR_REVIEW |
Caltech mirror | http://biomodels.caltech.edu/BIOMD0000000048 |
omicsdi |
BioModels through OmicsDI | https://www.omicsdi.org/dataset/biomodels/BIOMD0000000048 |