BioModels Database is a data resource that allows biologists to store, search and retrieve published mathematical models of biological interests.

Alternative Prefixes
Michael Hucka   0000-0001-9105-5960   mhucka
Pattern for Local Unique Identifiers

Local identifiers in BioModels Database should match this regular expression:

Example Local Unique Identifier
BIOMD0000000048   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from BioModels Database should match this regular expression:

Example CURIE
2006 BioModels Database: a free, centralized database of curated, published, quantitative kinetic models of biochemical and cellular systems
Metaregistry BioModels Database

The metaregistry provides mappings between the Bioregistry and other registries. There are 5 mappings to external registries for this resource with 3 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext BIOMODELS.DB
GO Gene Ontology Registry logo go BIOMD logo miriam biomodels.db
N2T Name-to-Thing logo n2t biomodels.db
Prefix Commons Prefix Commons logo prefixcommons biomodels

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier BIOMD0000000048 is used to demonstrate the providers available for BioModels Database. A guide for curating additional providers can be found here.

Name Metaprefix URI
BioModels Database biomodels.db
Bioregistry bioregistry miriam
Name-to-Thing n2t
Extra Providers

Additional providers curated in the Bioregistry are listed here. These are typically inherited from or Prefix Commons, and need extra curation.

Code Name URL
CURATOR_REVIEW Caltech mirror
bio2rdf Bio2RDF
omicsdi BioModels through OmicsDI