BioModels Database is a data resource that allows biologists to store, search and retrieve published mathematical models of biological interests.

Prefix
biomodels.db
Alternative Prefixes
BIOMD
Links
Homepage
Contact
Missing Contact
Pattern for Local Unique Identifiers

Local identifiers in BioModels Database should match this regular expression:
^((BIOMD|MODEL)\d{10})|(BMID\d{12})$

Example Local Unique Identifier
BIOMD0000000048   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from BioModels Database should match this regular expression:
^biomodels.db:((BIOMD|MODEL)\d{10})|(BMID\d{12})$

Example CURIE
biomodels.db:BIOMD0000000048
Metaregistry

The metaregistry provides mappings between the Bioregistry and other registries. There are 4 mappings to external registries for biomodels.db.

Registry Name Metaprefix External Prefix
Gene Ontology Registry go BIOMD
Identifiers.org miriam biomodels.db
Name-to-Thing n2t biomodels.db
Prefix Commons prefixcommons BIOMODELS.DB
Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE biomodels.db:BIOMD0000000048 is used to demonstrate the provides available for biomodels.db. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
BioModels Database biomodels.db https://www.ebi.ac.uk/biomodels/BIOMD0000000048
Bioregistry bioregistry https://bioregistry.io/biomodels.db:BIOMD0000000048
Identifiers.org miriam https://identifiers.org/biomodels.db:BIOMD0000000048
Name-to-Thing n2t https://n2t.net/biomodels.db:BIOMD0000000048
Extra Providers

Additional providers curated in the Bioregistry are listed here.

Code Name URL
CURATOR_REVIEW Caltech mirror http://biomodels.caltech.edu/BIOMD0000000048
omicsdi BioModels through OmicsDI https://www.omicsdi.org/dataset/biomodels/BIOMD0000000048