Registry Biolink Model
A high level datamodel of biological entities (genes, diseases, phenotypes, pathways, individuals, substances, etc) and their associations.
- Prefix
biolink- Keywords
- biomedical science functional genomics medical biotechnology medical informatics ontology translational medicine
- Links
- Homepage Repository OWL
- Contact
- Chris Mungall 0000-0002-6601-2165 cmungall
- Pattern for Local Unique Identifiers
-
Local identifiers in Biolink Model should match this regular expression:
^\S+$ - Example Local Unique Identifier
- Gene Resolve
- Pattern for CURIES
-
Compact URIs (CURIEs) constructed from Biolink Model should match this regular expression:
^biolink:\S+$ - Example CURIE
- biolink:Gene
Metaregistry Biolink Model
The metaregistry provides mappings between the Bioregistry and other registries. There are
5 mappings to external registries for biolink with
2 unique external prefixes.
| Registry Name | Registry Metaprefix | External Prefix | Curate |
|---|---|---|---|
AberOWL
|
aberowl |
BIOLINK
|
|
Biolink
|
biolink |
biolink
|
|
BioPortal
|
bioportal |
BIOLINK
|
|
FAIRSharing
|
fairsharing |
FAIRsharing.ad9d85
|
|
Identifiers.org
|
miriam |
biolink
|
Providers
Providers are various services that resolve CURIEs to URLs. The example CURIE
biolink:Gene
is used to demonstrate the provides available for
biolink. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.
| Name | Metaprefix | URI |
|---|---|---|
| Biolink Model | biolink |
https://w3id.org/biolink/vocab/Gene |
| Bioregistry | bioregistry |
https://bioregistry.io/biolink:Gene |
| Identifiers.org | miriam |
https://identifiers.org/biolink:Gene |