A high level datamodel of biological entities (genes, diseases, phenotypes, pathways, individuals, substances, etc) and their associations.

Homepage OWL
Chris Mungall   0000-0002-6601-2165   cmungall
Pattern for Local Unique Identifiers

Local identifiers in Biolink Model should match this regular expression:

Example Local Unique Identifier
Gene   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from Biolink Model should match this regular expression:

Example CURIE
Metaregistry Biolink Model

The metaregistry provides mappings between the Bioregistry and other registries. There are 5 mappings to external registries for biolink with 2 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
AberOWL aberowl BIOLINK
Biolink Model Registry biolink biolink
BioPortal Prefixes bioportal BIOLINK
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.ad9d85
Identifiers.org Identifiers.org logo miriam biolink

Providers are various services that resolve CURIEs to URLs. The example CURIE biolink:Gene is used to demonstrate the provides available for biolink. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
Biolink Model biolink https://w3id.org/biolink/vocab/Gene
Bioregistry bioregistry https://bioregistry.io/biolink:Gene
Identifiers.org miriam https://identifiers.org/biolink:Gene