Registry BioContext

Suggest

BioContext contains modular JSON-LD contexts for bioinformatics data.

Prefix: biocontext
Keywords: biomedicine registry
Links: Homepage

Identifier Standards

Pattern for Local Unique Identifiers: Missing LUI pattern
Example Local Unique Identifier: CHEBI Resolve
Example CURIE: biocontext:CHEBI

Contacts

Contact: Chris Mungall 0000-0002-6601-2165 cmungall
Contributor: creator Charles Tapley Hoyt 0000-0003-4423-4370 cthoyt

Providers

Suggest

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier CHEBI is used to demonstrate the providers available for BioContext. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.

Provider Name	Provider Code	URI
BioContext	`biocontext`	https://bioregistry.io/metaregistry/biocontext/CHEBI
Bioregistry	`bioregistry`	https://bioregistry.io/biocontext:CHEBI

This name annotation was originally annotated in Bioregistry and is redistributed under the CC0 license.

Get the name:

>>> import bioregistry as br
>>> br.get_name("biocontext")
'BioContext'

Get the homepage:

>>> import bioregistry as br
>>> br.get_homepage("biocontext")
'https://github.com/prefixcommons/biocontext'

Get the contact's name:

>>> import bioregistry as br
>>> br.get_contact_name("biocontext")
'Chris Mungall'

Get the contact's email:

>>> import bioregistry as br
>>> br.get_contact_email("biocontext")
'cjmungall@lbl.gov'

Get the contact's GitHub handle:

>>> import bioregistry as br
>>> br.get_contact_github("biocontext")
'cmungall'

Get the contact's ORCiD identifier:

>>> import bioregistry as br
>>> br.get_contact_orcid("biocontext")
'0000-0002-6601-2165'