BiGG is a knowledgebase of Biochemically, Genetically and Genomically structured genome-scale metabolic network reconstructions. It more published genome-scale metabolic networks into a single database with a set of stardized identifiers called BiGG IDs. Genes in the BiGG models are mapped to NCBI genome annotations, and metabolites are linked to many external databases (KEGG, PubChem, and many more). This collection references reactions.
bigg.reaction
Local identifiers in BiGG Reaction should match this
regular expression:
^[a-z_A-Z0-9]+$
Compact URIs (CURIEs) constructed from BiGG Reaction should match
this regular expression:
^bigg\.reaction:[a-z_A-Z0-9]+$
The metaregistry provides mappings between the Bioregistry and other registries. There are
3 mappings to external registries for bigg.reaction
with
1 unique external prefixes.
Registry Name | Registry Metaprefix | External Prefix | Curate |
---|---|---|---|
BioContext | biocontext |
BIGG.REACTION
|
|
Identifiers.org
![]() |
miriam |
bigg.reaction
|
|
N2T
![]() |
n2t |
bigg.reaction
|
Providers are various services that resolve CURIEs to URLs. The example CURIE
bigg.reaction:13GS
is used to demonstrate the provides available for
bigg.reaction
. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.
Name | Metaprefix | URI |
---|---|---|
BiGG Reaction | bigg.reaction |
http://bigg.ucsd.edu/models/universal/reactions/13GS |
Bioregistry | bioregistry |
https://bioregistry.io/bigg.reaction:13GS |
Identifiers.org | miriam |
https://identifiers.org/bigg.reaction:13GS |
Name-to-Thing | n2t |
https://n2t.net/bigg.reaction:13GS |