BiGG is a knowledgebase of Biochemically, Genetically and Genomically structured genome-scale metabolic network reconstructions. It more published genome-scale metabolic networks into a single database with a set of stardized identifiers called BiGG IDs. Genes in the BiGG models are mapped to NCBI genome annotations, and metabolites are linked to many external databases (KEGG, PubChem, and many more). This collection references reactions.
- Prefix
bigg.reaction- License
- http://bigg.ucsd.edu/license#license
- Links
- Homepage
- Contact
- Missing Contact
- Pattern for Local Unique Identifiers
-
Local identifiers in BiGG Reaction should match this regular expression:
^[a-z_A-Z0-9]+$ - Example Local Unique Identifier
- 13GS Resolve
- Pattern for CURIES
-
Compact URIs (CURIEs) constructed from BiGG Reaction should match this regular expression:
^bigg\.reaction:[a-z_A-Z0-9]+$ - Example CURIE
- bigg.reaction:13GS
Metaregistry BiGG Reaction
The metaregistry provides mappings between the Bioregistry and other registries. There are 3 mappings to external registries for this resource with 1 unique external prefixes.
| Registry Name | Registry Metaprefix | External Prefix | Curate |
|---|---|---|---|
| BioContext | biocontext |
BIGG.REACTION
|
|
Identifiers.org
|
miriam |
bigg.reaction
|
|
N2T
|
n2t |
bigg.reaction
|
Providers
A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).
The local unique identifier 13GS is used to demonstrate the providers
available for BiGG Reaction. A guide for curating additional providers can be found
here.
| Name | Metaprefix | URI |
|---|---|---|
| BiGG Reaction | bigg.reaction |
http://bigg.ucsd.edu/models/universal/reactions/13GS |
| Bioregistry | bioregistry |
https://bioregistry.io/bigg.reaction:13GS |
| Identifiers.org | miriam |
https://identifiers.org/bigg.reaction:13GS |
| Name-to-Thing | n2t |
https://n2t.net/bigg.reaction:13GS |