Registry BiGG Model
BiGG is a knowledgebase of Biochemically, Genetically and Genomically structured genome-scale metabolic network reconstructions. It more published genome-scale metabolic networks into a single database with a set of stardized identifiers called BiGG IDs. Genes in the BiGG models are mapped to NCBI genome annotations, and metabolites are linked to many external databases (KEGG, PubChem, and many more). This collection references individual models.
- Prefix
bigg.model- Links
- Homepage
- Contact
- Missing Contact
- Pattern for Local Unique Identifiers
-
Local identifiers in BiGG Model should match this regular expression:
^[a-z_A-Z0-9]+$ - Example Local Unique Identifier
- iECABU_c1320 Resolve
- Pattern for CURIES
-
Compact URIs (CURIEs) constructed from BiGG Model should match this regular expression:
^bigg\.model:[a-z_A-Z0-9]+$ - Example CURIE
- bigg.model:iECABU_c1320
Metaregistry BiGG Model
The metaregistry provides mappings between the Bioregistry and other registries. There are 3 mappings to external registries for this resource with 1 unique external prefixes.
| Registry Name | Registry Metaprefix | External Prefix | Curate |
|---|---|---|---|
| BioContext | biocontext |
BIGG.MODEL
|
|
Identifiers.org
|
miriam |
bigg.model
|
|
N2T
|
n2t |
bigg.model
|
Providers
Providers are various services that resolve CURIEs to URLs. The example CURIE
None:iECABU_c1320
is used to demonstrate the provides available for
this resource. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.
| Name | Metaprefix | URI |
|---|---|---|
| BiGG Model | bigg.model |
http://bigg.ucsd.edu/models/iECABU_c1320 |
| Bioregistry | bioregistry |
https://bioregistry.io/bigg.model:iECABU_c1320 |
| Identifiers.org | miriam |
https://identifiers.org/bigg.model:iECABU_c1320 |
| Name-to-Thing | n2t |
https://n2t.net/bigg.model:iECABU_c1320 |