BiGG is a knowledgebase of Biochemically, Genetically and Genomically structured genome-scale metabolic network reconstructions. It more published genome-scale metabolic networks into a single database with a set of stardized identifiers called BiGG IDs. Genes in the BiGG models are mapped to NCBI genome annotations, and metabolites are linked to many external databases (KEGG, PubChem, and many more). This collection references model compartments.

Prefix

bigg.compartment

License

http://bigg.ucsd.edu/license#license

Links

Homepage

Contact

Missing Contact

Pattern for Local Unique Identifiers

Local identifiers in BiGG Compartment should match this regular expression:
^c|cm|cx|e|f|g|h|i|im|l|m|mm|n|p|r|s|u|um|v|w|x|y$

Example Local Unique Identifier

c   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from BiGG Compartment should match this regular expression:
^bigg\.compartment:c|cm|cx|e|f|g|h|i|im|l|m|mm|n|p|r|s|u|um|v|w|x|y$

Example CURIE

bigg.compartment:c

A summary of the relations in the Bioregistry schema can be found here.

Part Of (bfo:0000050 )

bigg (not directly registered)

The metaregistry provides mappings between the Bioregistry and other registries. There are 3 mappings to external registries for this resource with 1 unique external prefixes.

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier c is used to demonstrate the providers available for BiGG Compartment. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.