BiGG is a knowledgebase of Biochemically, Genetically and Genomically structured genome-scale metabolic network reconstructions. It more published genome-scale metabolic networks into a single database with a set of stardized identifiers called BiGG IDs. Genes in the BiGG models are mapped to NCBI genome annotations, and metabolites are linked to many external databases (KEGG, PubChem, and many more). This collection references model compartments.

Prefix

bigg.compartment

Links

Homepage

Contact

Missing Contact

Pattern for Local Unique Identifiers

Local identifiers in BiGG Compartment should match this regular expression:
^[a-z_A-Z]+$

Example Local Unique Identifier

c   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from BiGG Compartment should match this regular expression:
^bigg\.compartment:[a-z_A-Z]+$

Example CURIE

bigg.compartment:c

The metaregistry provides mappings between the Bioregistry and other registries. There are 3 mappings to external registries for bigg.compartment with 1 unique external prefixes.

Providers are various services that resolve CURIEs to URLs. The example CURIE bigg.compartment:c is used to demonstrate the provides available for bigg.compartment. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.