Bgee is a database of gene expression patterns within particular anatomical structures within a species, and between different animal species. This collection refers to anatomical structures.
- Prefix
bgee.organ- Links
- Homepage
- References
- GitHub Issue https://github.com/biopragmatics/bioregistry/issues/889
Identifier Standards
- Pattern for Local Unique Identifiers
-
Local identifiers in Bgee organ should match this regular expression:
^(XAO|ZFA|EHDAA|EMAPA|EV|MA)\:\d+$ - Example Local Unique Identifier
- EHDAA:2185 Resolve
- Pattern for CURIES
-
Compact URIs (CURIEs) constructed from Bgee organ should match this regular expression:
^bgee\.organ:(XAO|ZFA|EHDAA|EMAPA|EV|MA)\:\d+$ - Example CURIE
- bgee.organ:EHDAA:2185
Contacts
- Contact
- Missing Contact
- Identifier Space Owner
-
SIB Swiss Institute of Bioinformatics
- Contributors
-
contributor
Sébastien Moretti
0000-0003-3947-488X
smoretti
Mappings to External Registries
Mappings from records in Bioregistry to external registries comprises the metaregistry. This resource has 3 mappings to external registries with 1 unique external prefixes.
| Registry Name | Registry Metaprefix | External Prefix | Curate |
|---|---|---|---|
| BioContext | biocontext |
BGEE.ORGAN
|
|
Identifiers.org
|
miriam |
bgee.organ
|
|
N2T
|
n2t |
bgee.organ
|
Providers
A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).
The local unique identifier EHDAA:2185 is used to demonstrate the providers
available for Bgee organ. Some providers may use a different example, which is displayed in the table below.
A guide for curating additional providers can be found
here.
| Provider Name | Provider Code | URI |
|---|---|---|
| Bgee organ | bgee.organ |
http://bgee.unil.ch/bgee/bgee?page=anatomy&action=organ_details&organ_children=on&organ_id=EHDAA:2185 |
| Bioregistry | bioregistry |
https://bioregistry.io/bgee.organ:EHDAA:2185 |
| Identifiers.org | miriam |
https://identifiers.org/bgee.organ:EHDAA:2185 |
| Name-to-Thing | n2t |
https://n2t.net/bgee.organ:EHDAA:2185 |