Bgee is a database to retrieve and compare gene expression patterns in multiple species, produced from multiple data types (bulk RNA-Seq, scRNA-Seq, Affymetrix, in situ hybridization, and EST data). This collection references genes in Bgee.
bgee.gene
Local identifiers in Bgee gene should match this
regular expression:
^[A-Za-z0-9]+$
Compact URIs (CURIEs) constructed from Bgee gene should match
this regular expression:
^bgee\.gene:[A-Za-z0-9]+$
The metaregistry provides mappings between the Bioregistry and other registries. There are 4 mappings to external registries for this resource with 2 unique external prefixes.
Registry Name | Registry Metaprefix | External Prefix | Curate |
---|---|---|---|
BioContext | biocontext |
BGEE.GENE
|
|
Identifiers.org
![]() |
miriam |
bgee.gene
|
|
N2T
![]() |
n2t |
bgee.gene
|
|
Prefix Commons
|
prefixcommons |
bgee
|
Providers are various services that resolve CURIEs to URLs. The example CURIE
None:FBgn0000015
is used to demonstrate the provides available for
this resource. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.
Name | Metaprefix | URI |
---|---|---|
Bgee gene | bgee.gene |
https://www.bgee.org/gene/FBgn0000015 |
Bioregistry | bioregistry |
https://bioregistry.io/bgee.gene:FBgn0000015 |
Identifiers.org | miriam |
https://identifiers.org/bgee.gene:FBgn0000015 |
Name-to-Thing | n2t |
https://n2t.net/bgee.gene:FBgn0000015 |
Additional providers curated in the Bioregistry are listed here.
Code | Name | URL |
---|---|---|
bio2rdf |
Bio2RDF | http://bio2rdf.org/bgee:FBgn0000015 |