Bgee is a database to retrieve and compare gene expression patterns in multiple species, produced from multiple data types (RNA-Seq, Affymetrix, in situ hybridization, and EST data). This collection references genes in Bgee.
bgee.gene
Local identifiers in Bgee gene should match this
regular expression:
^[A-Za-z]+\d+$
Compact URIs (CURIEs) constructed from Bgee gene should match
this regular expression:
^bgee\.gene:[A-Za-z]+\d+$
The metaregistry provides mappings between the Bioregistry and other registries. There are
4 mappings to external registries for bgee.gene
with
2 unique external prefixes.
Registry Name | Registry Metaprefix | External Prefix | Curate |
---|---|---|---|
BioContext | biocontext |
BGEE.GENE
|
|
Identifiers.org
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miriam |
bgee.gene
|
|
Name-to-Thing
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n2t |
bgee.gene
|
|
Prefix Commons | prefixcommons |
bgee
|
Providers are various services that resolve CURIEs to URLs. The example CURIE
bgee.gene:FBgn0000015
is used to demonstrate the provides available for
bgee.gene
. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.
Name | Metaprefix | URI |
---|---|---|
Bgee gene | bgee.gene |
https://bgee.org/?page=gene&gene_id=FBgn0000015 |
Bioregistry | bioregistry |
https://bioregistry.io/bgee.gene:FBgn0000015 |
Identifiers.org | miriam |
https://identifiers.org/bgee.gene:FBgn0000015 |
Name-to-Thing | n2t |
https://n2t.net/bgee.gene:FBgn0000015 |