Bgee is a database to retrieve and compare gene expression patterns in multiple species, produced from multiple data types (bulk RNA-Seq, scRNA-Seq, Affymetrix, in situ hybridization, and EST data). This collection references genes in Bgee.

Prefix
bgee.gene
Keywords
gene expression
Links
Homepage
Contact
Sebastien Moretti   0000-0003-3947-488X   smoretti
Pattern for Local Unique Identifiers

Local identifiers in Bgee gene should match this regular expression:
^[A-Za-z0-9]+$

Example Local Unique Identifier
FBgn0000015   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from Bgee gene should match this regular expression:
^bgee\.gene:[A-Za-z0-9]+$

Example CURIE
bgee.gene:FBgn0000015
References
GitHub Issue https://github.com/biopragmatics/bioregistry/issues/890
Contributors
Metaregistry Bgee gene

The metaregistry provides mappings between the Bioregistry and other registries. There are 4 mappings to external registries for this resource with 2 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext BGEE.GENE
Identifiers.org Identifiers.org logo miriam bgee.gene
N2T Name-to-Thing logo n2t bgee.gene
Prefix Commons Prefix Commons logo prefixcommons bgee
Providers

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier FBgn0000015 is used to demonstrate the providers available for Bgee gene. A guide for curating additional providers can be found here.

Name Metaprefix URI
Bgee gene bgee.gene https://www.bgee.org/gene/FBgn0000015
Bioregistry bioregistry https://bioregistry.io/bgee.gene:FBgn0000015
Identifiers.org miriam https://identifiers.org/bgee.gene:FBgn0000015
Name-to-Thing n2t https://n2t.net/bgee.gene:FBgn0000015
Extra Providers

Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.

Code Name URL
bio2rdf Bio2RDF http://bio2rdf.org/bgee:FBgn0000015