Bgee is a database to retrieve and compare gene expression patterns in multiple species, produced from multiple data types (bulk RNA-Seq, scRNA-Seq, Affymetrix, in situ hybridization, and EST data). This collection references genes in Bgee.

gene expression
Sebastien Moretti   0000-0003-3947-488X   smoretti
Pattern for Local Unique Identifiers

Local identifiers in Bgee gene should match this regular expression:

Example Local Unique Identifier
FBgn0000015   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from Bgee gene should match this regular expression:

Example CURIE
GitHub Issue
Metaregistry Bgee gene

The metaregistry provides mappings between the Bioregistry and other registries. There are 4 mappings to external registries for this resource with 2 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext BGEE.GENE logo miriam bgee.gene
N2T Name-to-Thing logo n2t bgee.gene
Prefix Commons Prefix Commons logo prefixcommons bgee

Providers are various services that resolve CURIEs to URLs. The example CURIE None:FBgn0000015 is used to demonstrate the provides available for this resource. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name Metaprefix URI
Bgee gene bgee.gene
Bioregistry bioregistry miriam
Name-to-Thing n2t
Extra Providers

Additional providers curated in the Bioregistry are listed here.

Code Name URL
bio2rdf Bio2RDF