Bgee is a database to retrieve and compare gene expression patterns in multiple species, produced from multiple data types (bulk RNA-Seq, scRNA-Seq, Affymetrix, in situ hybridization, and EST data). This collection references genes in Bgee.

gene expression
Sebastien Moretti   0000-0003-3947-488X   smoretti
Pattern for Local Unique Identifiers

Local identifiers in Bgee gene should match this regular expression:

Example Local Unique Identifier
FBgn0000015   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from Bgee gene should match this regular expression:

Example CURIE
GitHub Issue
Metaregistry Bgee gene

The metaregistry provides mappings between the Bioregistry and other registries. There are 4 mappings to external registries for this resource with 2 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext BGEE.GENE logo miriam bgee.gene
N2T Name-to-Thing logo n2t bgee.gene
Prefix Commons Prefix Commons logo prefixcommons bgee

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier FBgn0000015 is used to demonstrate the providers available for Bgee gene. A guide for curating additional providers can be found here.

Name Metaprefix URI
Bgee gene bgee.gene
Bioregistry bioregistry miriam
Name-to-Thing n2t
Extra Providers

Additional providers curated in the Bioregistry are listed here. These are typically inherited from or Prefix Commons, and need extra curation.

Code Name URL
bio2rdf Bio2RDF