Registry Ascomycete phenotype ontology

Suggest

A structured controlled vocabulary for the phenotypes of Ascomycete fungi.

Prefix

apo

Preferred Prefix

APO

Keywords

cell biology genomics life cycle stage life science morphology mutation obo ontology phenomics phenotype study design

Version

2025-03-25

License

CC-BY-4.0

Links

Homepage Repository OBO OWL

Contact

Stacia R Engel 0000-0001-5472-917X srengel

Pattern for Local Unique Identifiers

Local identifiers in Ascomycete phenotype ontology should match this regular expression:
^\d{7}$

Example Local Unique Identifier

0000184 Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from Ascomycete phenotype ontology should match this regular expression:
^APO:\d{7}$

Example CURIE

APO:0000184

Publications

2009 New mutant phenotype data curation system in the Saccharomyces Genome Database

References

GitHub PR https://github.com/biopragmatics/bioregistry/pull/1098

Contributors

contributor Sumir H Pandit 0000-0002-1216-4761 sumirp

Metaregistry Ascomycete phenotype ontology

The metaregistry provides mappings between the Bioregistry and other registries. There are 7 mappings to external registries for this resource with 2 unique external prefixes.

Registry Name	Registry Metaprefix	External Prefix
AberOWL	`aberowl`	`APO`
BioContext	`biocontext`	`APO`
BioPortal	`bioportal`	`APO`
FAIRSharing	`fairsharing`	`FAIRsharing.dyqz3y`
OBO Foundry	`obofoundry`	`apo`
OLS	`ols`	`apo`
OntoBee	`ontobee`	`APO`

RDF Information

When using this resource in RDF, the following URI format should be used:

http://purl.obolibrary.org/obo/APO_$1

Providers

Suggest

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier 0000184 is used to demonstrate the providers available for Ascomycete phenotype ontology. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.

Name	Metaprefix	URI
Ascomycete phenotype ontology	`apo`	http://purl.obolibrary.org/obo/APO_0000184
Ascomycete phenotype ontology (RDF)	`rdf`	http://purl.obolibrary.org/obo/APO_0000184
Bioregistry	`bioregistry`	https://bioregistry.io/apo:0000184
OBO Foundry	`obofoundry`	http://purl.obolibrary.org/obo/APO_0000184
Ontology Lookup Service	`ols`	https://www.ebi.ac.uk/ols4/ontologies/apo/terms?iri=http://purl.obolibrary.org/obo/APO_0000184
BioPortal Prefixes	`bioportal`	https://bioportal.bioontology.org/ontologies/APO/?p=classes&conceptid=http://purl.obolibrary.org/obo/APO_0000184

Get the version:

>>> import bioregistry as br
>>> br.get_version("apo")
'2025-03-25'

This name annotation was originally annotated in OBO Foundry and is redistributed under the CC0 license.

Get the name:

>>> import bioregistry as br
>>> br.get_name("apo")
'Ascomycete phenotype ontology'

Get the license:

>>> import bioregistry as br
>>> br.get_license("apo")
'CC-BY-4.0'

Get the homepage:

>>> import bioregistry as br
>>> br.get_homepage("apo")
'http://www.yeastgenome.org/'

Get the repository:

>>> import bioregistry as br
>>> br.get_repository("apo")
'https://github.com/obophenotype/ascomycete-phenotype-ontology'

Get the OBO download link:

>>> import bioregistry as br
>>> br.get_obo_download("apo")
'http://purl.obolibrary.org/obo/apo.obo'

Get the OWL download link:

>>> import bioregistry as br
>>> br.get_owl_download("apo")
'http://purl.obolibrary.org/obo/apo.owl'

Get the contact's name:

>>> import bioregistry as br
>>> br.get_contact_name("apo")
'Stacia R Engel'

Get the contact's email:

>>> import bioregistry as br
>>> br.get_contact_email("apo")
'stacia@stanford.edu'

Get the contact's GitHub handle:

>>> import bioregistry as br
>>> br.get_contact_github("apo")
'srengel'

Get the contact's ORCiD identifier:

>>> import bioregistry as br
>>> br.get_contact_orcid("apo")
'0000-0001-5472-917X'