Bioregistry - Ascomycete phenotype ontology

Registry Ascomycete phenotype ontology

A structured controlled vocabulary for the phenotypes of Ascomycete fungi.

Prefix: apo
Preferred Prefix: APO
Version: 2022-07-06
License: CC BY 4.0
Links: Homepage Repository OBO OWL
Contact: Stacia R Engel 0000-0001-5472-917X srengel
Pattern for Local Unique Identifiers: Local identifiers in Ascomycete phenotype ontology should match this regular expression:
^\d{7}$
Example Local Unique Identifier: 0000184 Resolve
Pattern for CURIES: Compact URIs (CURIEs) constructed from Ascomycete phenotype ontology should match this regular expression:
^apo:\d{7}$
Example CURIE: apo:0000184
Publications: 2009 New mutant phenotype data curation system in the Saccharomyces Genome Database.

Ontology

Canonical For (1): YPO

Metaregistry Ascomycete phenotype ontology

The metaregistry provides mappings between the Bioregistry and other registries. There are 7 mappings to external registries for apo with 3 unique external prefixes.

Registry Name	Metaprefix	External Prefix
AberOWL	`aberowl`	`APO`
BioContext	`biocontext`	`YPO`
BioPortal Prefixes	`bioportal`	`APO`
FAIRSharing	`fairsharing`	`FAIRsharing.dyqz3y`
OBO Foundry	`obofoundry`	`apo`
Ontology Lookup Service	`ols`	`apo`
OntoBee	`ontobee`	`APO`

Providers

Providers are various services that resolve CURIEs to URLs. The example CURIE apo:0000184 is used to demonstrate the provides available for apo. Generation of OLS and BioPortal URLs requires additional programmatic logic beyond string formatting.

Name	Metaprefix	URI
Ascomycete phenotype ontology	`apo`	https://www.yeastgenome.org/observable/APO:0000184
Bioregistry	`bioregistry`	https://bioregistry.io/apo:0000184
OBO Foundry	`obofoundry`	http://purl.obolibrary.org/obo/APO_0000184
Ontology Lookup Service	`ols`	https://www.ebi.ac.uk/ols/ontologies/apo/terms?iri=http://purl.obolibrary.org/obo/APO_0000184
BioPortal Prefixes	`bioportal`	https://bioportal.bioontology.org/ontologies/APO/?p=classes&conceptid=http://purl.obolibrary.org/obo/APO_0000184

Get the version:

>>> import bioregistry as br
>>> br.get_version("apo")
'2022-07-06'

Get the license:

>>> import bioregistry as br
>>> br.get_license("apo")
'CC BY 4.0'

Get the homepage:

>>> import bioregistry as br
>>> br.get_homepage("apo")
'http://www.yeastgenome.org/'

Get the repository:

>>> import bioregistry as br
>>> br.get_repository("apo")
'https://github.com/obophenotype/ascomycete-phenotype-ontology'

Get the OBO download link:

>>> import bioregistry as br
>>> br.get_obo_download("apo")
'http://purl.obolibrary.org/obo/apo.obo'

Get the OWL download link:

>>> import bioregistry as br
>>> br.get_owl_download("apo")
'http://purl.obolibrary.org/obo/apo.owl'

Get the contact's name:

>>> import bioregistry as br
>>> br.get_contact_name("apo")
'Stacia R Engel'

Get the contact's email:

>>> import bioregistry as br
>>> br.get_contact_email("apo")
'stacia@stanford.edu'

Get the contact's GitHub handle:

>>> import bioregistry as br
>>> br.get_contact_github("apo")
'srengel'

Get the contact's ORCiD identifier:

>>> import bioregistry as br
>>> br.get_contact_orcid("apo")
'0000-0001-5472-917X'