This site contains a comprehensive database of identified pseudogenes, utilities used to find pseudogenes, various publication data sets and a pseudogene knowledgebase.
- Prefix
pseudogene- Alternative Prefixes
- pseudogene.org
- Keywords
- gene ontology
- Links
- Homepage
- Contact
- Mark Gerstein 0000-0002-9746-3719
- Pattern for Local Unique Identifiers
- Missing LUI pattern
- Example Local Unique Identifier
- PGOHUM00000289843 Resolve
- Example CURIE
- pseudogene:PGOHUM00000289843
- Contributors
-
- submitter Charles Tapley Hoyt 0000-0003-4423-4370 cthoyt
Metaregistry PseudoGene
The metaregistry provides mappings between the Bioregistry and other registries. There are 3 mappings to external registries for this resource with 3 unique external prefixes.
| Registry Name | Registry Metaprefix | External Prefix | Curate |
|---|---|---|---|
BioPortal
|
bioportal |
pseudo
|
|
Integbio
|
integbio |
nbdc00178
|
|
Prefix Commons
|
prefixcommons |
pseudogene
|
Providers
A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).
The local unique identifier PGOHUM00000289843 is used to demonstrate the providers
available for PseudoGene. A guide for curating additional providers can be found
here.
| Name | Metaprefix | URI |
|---|---|---|
| PseudoGene | pseudogene |
http://tables.pseudogene.org/[?species_name]/PGOHUM00000289843 |
| Bioregistry | bioregistry |
https://bioregistry.io/pseudogene:PGOHUM00000289843 |
Extra Providers
Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.
| Code | Name | URL |
|---|---|---|
bio2rdf |
Bio2RDF | http://bio2rdf.org/pseudogene:PGOHUM00000289843 |