The Progenetix database provides an overview of mutation data in cancer, with a focus on copy number abnormalities (CNV / CNA), for all types of human malignancies. The resource contains genome profiles of more than 130'000 individual samples and represents about 700 cancer types, according to the NCIt "neoplasm" classification. Additionally to this genome profiles and associated metadata, the website present information about thousands of publications referring to cancer genome profiling experiments, and services for mapping cancer classifications and accessing supplementary data through its APIs.

Prefix

pgx

Alternative Prefixes

Progenetix

Keywords

biomedical science genomics

Links

Homepage

Contact

Michael Baudis   0000-0002-9903-4248   mbaudis

Pattern for Local Unique Identifiers

Local identifiers in Progenetix should match this regular expression:
^\w{3,15}[-_]\w[\w.-]{3,128}$

Example Local Unique Identifier

pgxbs-kftva5zv   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from Progenetix should match this regular expression:
^pgx:\w{3,15}[-_]\w[\w.-]{3,128}$

Example CURIE

pgx:pgxbs-kftva5zv

Publications

• 2014 arrayMap 2014: an updated cancer genome resource
• 2014 Chromothripsis-like patterns are recurring but heterogeneously distributed features in a survey of 22,347 cancer genome screens
• 2013 Progenetix: 12 years of oncogenomic data curation
• 2012 arrayMap: a reference resource for genomic copy number imbalances in human malignancies
• 2007 Genomic imbalances in 5918 malignant epithelial tumors: an explorative meta-analysis of chromosomal CGH data
• 2006 Online database and bioinformatics toolbox to support data mining in cancer cytogenetics
• 2001 Progenetix.net: an online repository for molecular cytogenetic aberration data

The metaregistry provides mappings between the Bioregistry and other registries. There are 6 mappings to external registries for this resource with 4 unique external prefixes.

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier pgxbs-kftva5zv is used to demonstrate the providers available for Progenetix. A guide for curating additional providers can be found here.