PaxDb is a resource dedicated to integrating information on absolute protein abundance levels across different organisms. Publicly available experimental data are mapped onto a common namespace and, in the case of tandem mass spectrometry data, re-processed using a standardized spectral counting pipeline. Data sets are scored and ranked to assess consistency against externally provided protein-network information. PaxDb provides whole-organism data as well as tissue-resolved data, for numerous proteins. This collection references protein abundance information by species.

Prefix

paxdb.organism

Links

Homepage

Pattern for Local Unique Identifiers

Local identifiers in PaxDb Organism should match this regular expression:
^\d+$

Example Local Unique Identifier

9606   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from PaxDb Organism should match this regular expression:
^paxdb\.organism:\d+$

Example CURIE

paxdb.organism:9606

Contact

Missing Contact

Mappings from records in Bioregistry to external registries comprises the metaregistry. This resource has 3 mappings to external registries with 1 unique external prefixes.

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier 9606 is used to demonstrate the providers available for PaxDb Organism. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.