PaxDb is a resource dedicated to integrating information on absolute protein abundance levels across different organisms. Publicly available experimental data are mapped onto a common namespace and, in the case of tandem mass spectrometry data, re-processed using a standardized spectral counting pipeline. Data sets are scored and ranked to assess consistency against externally provided protein-network information. PaxDb provides whole-organism data as well as tissue-resolved data, for numerous proteins. This collection references protein abundance information by species.

Prefix

paxdb.organism

Links

Homepage

Contact

Missing Contact

Pattern for Local Unique Identifiers

Local identifiers in PaxDb Organism should match this regular expression:
^\d+$

Example Local Unique Identifier

9606   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from PaxDb Organism should match this regular expression:
^paxdb\.organism:\d+$

Example CURIE

paxdb.organism:9606

The metaregistry provides mappings between the Bioregistry and other registries. There are 3 mappings to external registries for this resource with 1 unique external prefixes.

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier 9606 is used to demonstrate the providers available for PaxDb Organism. A guide for curating additional providers can be found here.