The Orientations of Proteins in Membranes (OPM) database provides spatial positions of membrane-bound peptides and proteins of known three-dimensional structure in the lipid bilayer, together with their structural classification, topology and intracellular localization.
- Prefix
opm- Links
- Homepage
Identifier Standards
- Pattern for Local Unique Identifiers
-
Local identifiers in Orientations of Proteins in Membranes Database should match this regular expression:
^[0-9][A-Za-z0-9]{3}$ - Example Local Unique Identifier
- 1h68 Resolve
- Pattern for CURIES
-
Compact URIs (CURIEs) constructed from Orientations of Proteins in Membranes Database should match this regular expression:
^opm:[0-9][A-Za-z0-9]{3}$ - Example CURIE
- opm:1h68
Contacts
- Contact
- Missing Contact
Mappings to External Registries
Mappings from records in Bioregistry to external registries comprises the metaregistry. This resource has 3 mappings to external registries with 1 unique external prefixes.
| Registry Name | Registry Metaprefix | External Prefix | Curate |
|---|---|---|---|
| BioContext | biocontext |
OPM
|
|
Identifiers.org
|
miriam |
opm
|
|
N2T
|
n2t |
opm
|
Providers
A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).
The local unique identifier 1h68 is used to demonstrate the providers
available for Orientations of Proteins in Membranes Database. Some providers may use a different example, which is displayed in the table below.
A guide for curating additional providers can be found
here.
| Provider Name | Provider Code | URI |
|---|---|---|
| Orientations of Proteins in Membranes Database | opm |
http://opm.phar.umich.edu/protein.php?pdbid=1h68 |
| Bioregistry | bioregistry |
https://bioregistry.io/opm:1h68 |
| Identifiers.org | miriam |
https://identifiers.org/opm:1h68 |
| Name-to-Thing | n2t |
https://n2t.net/opm:1h68 |