Registry Minimum Information about a Tailoring Enzyme data repository

MITE (Minimum Information about a Tailoring Enzyme) is a data repository and associated data standard designed to capture the reaction- and substrate-specificities of tailoring enzymes. Community-driven and fully expert-reviewed, it represents enzymatic reactions using reaction SMARTS and links to established resources such as UniProt, NCBI GenPept, Rhea, and MIBiG. MITE serves as a knowledgebase for enzyme and pathway annotation, in silico biosynthesis, and machine learning applications.

Prefix: mite
License: CC0-1.0
Links: Homepage Repository Request Discussion
Publications: 2024 The Minimum Information about a Tailoring Enzyme/Maturase data standard for capturing natural product biosynthesis
References: GitHub Issue https://github.com/biopragmatics/bioregistry/issues/1982

Identifier Standards

Pattern for Local Unique Identifiers: Local identifiers in Minimum Information about a Tailoring Enzyme data repository should match this regular expression:
^MITE\d{7}$
Example Local Unique Identifier: MITE0000001 Resolve
Pattern for CURIES: Compact URIs (CURIEs) constructed from Minimum Information about a Tailoring Enzyme data repository should match this regular expression:
^mite:MITE\d{7}$
Example CURIE: mite:MITE0000001

Contacts

Contact: Mitja M. Zdouc 0000-0001-6534-6609 mmzdouc
Contributors: submitter Mitja M. Zdouc 0000-0001-6534-6609 mmzdouc; contributor Charles Tapley Hoyt 0000-0003-4423-4370 cthoyt
Reviewer: Benjamin M. Gyori 0000-0001-9439-5346 bgyori; Charles Tapley Hoyt 0000-0003-4423-4370 cthoyt

Providers

Suggest

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier MITE0000001 is used to demonstrate the providers available for Minimum Information about a Tailoring Enzyme data repository. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.

Provider Name	Provider Code	URI
Minimum Information about a Tailoring Enzyme data repository	`mite`	https://mite.lisc.univie.ac.at/repository/MITE0000001
Bioregistry	`bioregistry`	https://bioregistry.io/mite:MITE0000001

Extra Providers

Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.

Provider Name	Provider Code	URL
MITE Netherlands	`legacy`	https://mite.bioinformatics.nl/repository/MITE0000001

This name annotation was originally annotated in Bioregistry and is redistributed under the CC0 license.

Get the name:

>>> import bioregistry as br
>>> br.get_name("mite")
'Minimum Information about a Tailoring Enzyme data repository'

Get the license:

>>> import bioregistry as br
>>> br.get_license("mite")
'CC0-1.0'

Get the homepage:

>>> import bioregistry as br
>>> br.get_homepage("mite")
'https://mite.lisc.univie.ac.at'

Get the repository:

>>> import bioregistry as br
>>> br.get_repository("mite")
'https://github.com/mite-standard/mite_data'

Get the contact's name:

>>> import bioregistry as br
>>> br.get_contact_name("mite")
'Mitja M. Zdouc'

Get the contact's email:

>>> import bioregistry as br
>>> br.get_contact_email("mite")
'zdoucmm@gmail.com'

Get the contact's GitHub handle:

>>> import bioregistry as br
>>> br.get_contact_github("mite")
'mmzdouc'

Get the contact's ORCiD identifier:

>>> import bioregistry as br
>>> br.get_contact_orcid("mite")
'0000-0001-6534-6609'