A structured controlled vocabulary of the adult anatomy of the mouse (Mus)

Prefix
ma
Preferred Prefix
MA
Keywords
anatomy mouse obo ontology organ tissue
Version
2017-02-07
License
CC-BY-4.0
Links
Homepage Repository OBO OWL
Contact
Terry Hayamizu   0000-0002-0956-8634   tfhayamizu
Pattern for Local Unique Identifiers

Local identifiers in Mouse adult gross anatomy should match this regular expression:
^\d+$

Example Local Unique Identifier
0002502   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from Mouse adult gross anatomy should match this regular expression:
^MA:\d+$

Example CURIE
MA:0002502
MIRIAM Namespace Embedded in LUI
The legacy MIRIAM standard for generating CURIEs with this resource annotates the namespaceEmbeddedInLUI as true. This means that you may see local unique identifiers that include a redundant prefix and delimiter (also known as a banana) and therefore look like a CURIE. For Mouse adult gross anatomy, the banana looks like MA:. Therefore, you may see local unique identifiers for this resource that look like MA:0002502 (instead of the canonical form 0002502) and CURIEs for this resource that look like MA:MA:0002502 (instead of the canonical form MA:0002502). The Bioregistry will automatically strip off the banana when standardizing local unique identifiers and CURIEs.
Publications
2005 The Adult Mouse Anatomical Dictionary: a tool for annotating and integrating data
Metaregistry Mouse adult gross anatomy

The metaregistry provides mappings between the Bioregistry and other registries. There are 11 mappings to external registries for this resource with 2 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
AberOWL AberOWL logo aberowl MA
BioContext biocontext MA
BioPortal BioPortal Prefixes logo bioportal MA
FAIRSharing FAIRSharing logo fairsharing FAIRsharing.pdwqcr
GO Gene Ontology Registry logo go MA
Identifiers.org Identifiers.org logo miriam ma
N2T Name-to-Thing logo n2t ma
OBO Foundry OBO Foundry logo obofoundry ma
OLS Ontology Lookup Service logo ols ma
OntoBee OntoBee logo ontobee MA
Prefix Commons Prefix Commons logo prefixcommons ma
RDF Information

When using this resource in RDF, the following URI format should be used:

http://purl.obolibrary.org/obo/MA_$1

Providers

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier 0002502 is used to demonstrate the providers available for Mouse adult gross anatomy. A guide for curating additional providers can be found here.

Name Metaprefix URI
Mouse adult gross anatomy ma http://purl.obolibrary.org/obo/MA_0002502
Mouse adult gross anatomy (RDF) rdf http://purl.obolibrary.org/obo/MA_0002502
Bioregistry bioregistry https://bioregistry.io/ma:0002502
Identifiers.org miriam https://identifiers.org/MA:0002502
OBO Foundry obofoundry http://purl.obolibrary.org/obo/MA_0002502
Ontology Lookup Service ols https://www.ebi.ac.uk/ols4/ontologies/ma/terms?iri=http://purl.obolibrary.org/obo/MA_0002502
Name-to-Thing n2t https://n2t.net/ma:0002502
BioPortal Prefixes bioportal https://bioportal.bioontology.org/ontologies/MA/?p=classes&conceptid=http://purl.obolibrary.org/obo/MA_0002502
Extra Providers

Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.

Code Name URL
bio2rdf Bio2RDF http://bio2rdf.org/ma:0002502