The Human Phenotype Ontology (HPO) aims to provide a standardized vocabulary of phenotypic abnormalities encountered in human disease. Each term in the HPO describes a phenotypic abnormality, such as atrial septal defect. The HPO is currently being developed using the medical literature, Orphanet, DECIPHER, and OMIM.
hp
HP
Local identifiers in Human Phenotype Ontology should match this
regular expression:
^\d{7}$
Compact URIs (CURIEs) constructed from Human Phenotype Ontology should match
this regular expression:
^HP:\d{7}$
namespaceEmbeddedInLUI
as true.
This means that you may see local unique identifiers that include a redundant prefix and delimiter (also known
as a banana)
and therefore look like a CURIE. For Human Phenotype Ontology, the banana looks like
HP:
.
Therefore, you may see local unique identifiers for this resource that look like
HP:0011140
(instead of the canonical form 0011140
) and CURIEs for this resource that look like
HP:HP:0011140
(instead of the canonical form HP:0011140
).
The Bioregistry will automatically strip off the banana when standardizing local unique identifiers and CURIEs.
A summary of the relations in the Bioregistry schema can be found here.
bioregistry.schema:0000018
)
The metaregistry provides mappings between the Bioregistry and other registries. There are 13 mappings to external registries for this resource with 8 unique external prefixes.
Registry Name | Registry Metaprefix | External Prefix | Curate |
---|---|---|---|
AberOWL | aberowl |
HP_O
|
|
BARTOC | bartoc |
1937
|
|
BioContext | biocontext |
HPO
|
|
BioPortal | bioportal |
HP_O
|
|
FAIRSharing | fairsharing |
FAIRsharing.kbtt7f
|
|
HL7 | hl7 |
2.16.840.1.113883.6.339
|
|
Integbio | integbio |
nbdc02559
|
|
Identifiers.org | miriam |
hp
|
|
N2T | n2t |
hp
|
|
OBO Foundry | obofoundry |
hp
|
|
OLS | ols |
hp
|
|
OntoBee | ontobee |
HP
|
|
Wikidata | wikidata |
P3841
|
When using this resource in RDF, the following URI format should be used:
http://purl.obolibrary.org/obo/HP_$1
Providers are various services that resolve CURIEs to URLs. The example CURIE
HP:0011140
is used to demonstrate the provides available for
this resource. Generation of OLS and BioPortal URLs requires additional programmatic
logic beyond string formatting.