MetaNetX/MNXref integrates various information from genome-scale metabolic network reconstructions such as information on reactions, metabolites and compartments. This information undergoes a reconciliation process to minimise for discrepancies between different data sources, and makes the data accessible under a common namespace. This collection references cellular compartments.

Prefix

metanetx.compartment

Links

Homepage

Contact

Missing Contact

Pattern for Local Unique Identifiers

Local identifiers in MetaNetX compartment should match this regular expression:
^(MNX[CD]\d+|BOUNDARY|IN|OUT)$

Example Local Unique Identifier

MNXC15   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from MetaNetX compartment should match this regular expression:
^metanetx\.compartment:(MNX[CD]\d+|BOUNDARY|IN|OUT)$

Example CURIE

metanetx.compartment:MNXC15

The metaregistry provides mappings between the Bioregistry and other registries. There are 3 mappings to external registries for this resource with 1 unique external prefixes.

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier MNXC15 is used to demonstrate the providers available for MetaNetX compartment. A guide for curating additional providers can be found here.