Registry Multiplexed Assays of Variant Effect Database

Some IDs may represent experiment sets, e.g. https://www.mavedb.org/#/experiment-sets/urn:mavedb:00000011 Others represent genomic regions (specifically deep mutational scans thereof) e.g. https://www.mavedb.org/#/experiment-sets/urn:mavedb:00000011-a

Comment: This is an interesting one as the full IDs as they appear on the page are of the form urn:mavedb:00000011-a suggesting this is the preferred URI expansion for identification purposes. However, mavedb hasn't been registered with IANA https://www.iana.org/assignments/urn-namespaces/urn-namespaces.xhtml
Prefix: mavedb
Links: Homepage Repository Request Discussion
Publications: 2025 MaveDB 2024: a curated community database with over seven million variant effects from multiplexed functional assays; 2019 MaveDB: an open-source platform to distribute and interpret data from multiplexed assays of variant effect

Identifier Standards

Pattern for Local Unique Identifiers: Local identifiers in Multiplexed Assays of Variant Effect Database should match this regular expression:
^\S+$
Example Local Unique Identifiers: 00000011-a Resolve
00000011 Resolve
Pattern for CURIES: Compact URIs (CURIEs) constructed from Multiplexed Assays of Variant Effect Database should match this regular expression:
^mavedb:\S+$
Example CURIEs: mavedb:00000011-a
mavedb:00000011

Contacts

Contact: Alan Rubin 0000-0003-1474-605X afrubin
Contributors: submitter Chris Mungall 0000-0002-6601-2165 cmungall
Reviewer: Charles Tapley Hoyt 0000-0003-4423-4370 cthoyt

Providers

Suggest

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier 00000011-a is used to demonstrate the providers available for Multiplexed Assays of Variant Effect Database. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.

Name	Metaprefix	URI
Multiplexed Assays of Variant Effect Database	`mavedb`	https://www.mavedb.org/#/experiments/urn:mavedb:00000011-a
Bioregistry	`bioregistry`	https://bioregistry.io/mavedb:00000011-a

This name annotation was originally annotated in Bioregistry and is redistributed under the CC0 license.

Get the name:

>>> import bioregistry as br
>>> br.get_name("mavedb")
'Multiplexed Assays of Variant Effect Database'

Get the homepage:

>>> import bioregistry as br
>>> br.get_homepage("mavedb")
'https://www.mavedb.org'

Get the repository:

>>> import bioregistry as br
>>> br.get_repository("mavedb")
'https://github.com/VariantEffect/mavedb-api'

Get the contact's name:

>>> import bioregistry as br
>>> br.get_contact_name("mavedb")
'Alan Rubin'

Get the contact's email:

>>> import bioregistry as br
>>> br.get_contact_email("mavedb")
'alan.rubin@wehi.edu.au'

Get the contact's GitHub handle:

>>> import bioregistry as br
>>> br.get_contact_github("mavedb")
'afrubin'

Get the contact's ORCiD identifier:

>>> import bioregistry as br
>>> br.get_contact_orcid("mavedb")
'0000-0003-1474-605X'