MassBank is a federated database of reference spectra from different instruments, including high-resolution mass spectra of small metabolites (<3000 Da).

Prefix
massbank
Keywords
chemical structure metabolite method
Links
Homepage
Publications
2010 MassBank: a public repository for sharing mass spectral data for life sciences
Identifier Standards
Pattern for Local Unique Identifiers

Local identifiers in MassBank should match this regular expression:
^MSBNK-[0-9a-zA-Z_]+-[A-Z0-9_]+$

Example Local Unique Identifier
MSBNK-IPB_Halle-PB000166   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from MassBank should match this regular expression:
^massbank:MSBNK-[0-9a-zA-Z_]+-[A-Z0-9_]+$

Example CURIE
massbank:MSBNK-IPB_Halle-PB000166
Mappings to External Registries

Mappings from records in Bioregistry to external registries comprises the metaregistry. This resource has 5 mappings to external registries with 3 unique external prefixes.

Registry Name Registry Metaprefix External Prefix Curate
BioContext biocontext MASSBANK
Integbio Integbio logo integbio nbdc00298
Identifiers.org Identifiers.org logo miriam massbank
N2T Name-to-Thing logo n2t massbank
Wikidata Wikidata Property logo wikidata P6689
Providers

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier MSBNK-IPB_Halle-PB000166 is used to demonstrate the providers available for MassBank. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.

Provider Name Provider Code URI
MassBank massbank https://massbank.jp/MassBank/RecordDisplay?id=MSBNK-IPB_Halle-PB000166
Bioregistry bioregistry https://bioregistry.io/massbank:MSBNK-IPB_Halle-PB000166
Identifiers.org miriam https://identifiers.org/massbank:MSBNK-IPB_Halle-PB000166
Name-to-Thing n2t https://n2t.net/massbank:MSBNK-IPB_Halle-PB000166
Extra Providers

Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.

Provider Name Provider Code URL
MassBank in Europe massbankeu https://massbank.eu/MassBank/RecordDisplay?id=MSBNK-IPB_Halle-PB000166