The samples subsection of HuBMAP provides metadata about individual tissue samples collected from donors, and are the downstream experimental datasets for scRNA sequencing. Each sample has a unique identifier that links it to donor information, anatomical source, and related datasets.

Prefix
hubmap.sample
Links
Homepage Request Discussion
Contact
Katy Börner   0000-0002-3321-6137   katyb
Pattern for Local Unique Identifiers

Local identifiers in Human BioMolecular Atlas Program Sample should match this regular expression:
^[a-f0-9]{32}$

Example Local Unique Identifier
a3bc9e6193c47998758ac9d9bf9ddbb6   Resolve
Pattern for CURIES

Compact URIs (CURIEs) constructed from Human BioMolecular Atlas Program Sample should match this regular expression:
^hubmap\.sample:[a-f0-9]{32}$

Example CURIE
hubmap.sample:a3bc9e6193c47998758ac9d9bf9ddbb6
Publications
2025 Human BioMolecular Atlas Program (HuBMAP): 3D Human Reference Atlas construction and usage
Contributors
Reviewer
Benjamin M. Gyori   0000-0001-9439-5346   bgyori
Providers

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier a3bc9e6193c47998758ac9d9bf9ddbb6 is used to demonstrate the providers available for Human BioMolecular Atlas Program Sample. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.

Name Metaprefix URI
Human BioMolecular Atlas Program Sample hubmap.sample https://portal.hubmapconsortium.org/browse/sample/a3bc9e6193c47998758ac9d9bf9ddbb6
Bioregistry bioregistry https://bioregistry.io/hubmap.sample:a3bc9e6193c47998758ac9d9bf9ddbb6