HomoloGene is a system for automated detection of homologs among the annotated genes of several completely sequenced eukaryotic genomes.
- Prefix
homologene- Keywords
- gene genome life science
- Links
- Homepage
- Contact
- Eric W. Sayers 0000-0001-8394-3802
- Pattern for Local Unique Identifiers
-
Local identifiers in HomoloGene should match this regular expression:
^\d+$ - Example Local Unique Identifier
- 1000 Resolve
- Pattern for CURIES
-
Compact URIs (CURIEs) constructed from HomoloGene should match this regular expression:
^homologene:\d+$ - Example CURIE
- homologene:1000
- Publications
- 2010 Database resources of the National Center for Biotechnology Information
Metaregistry HomoloGene
The metaregistry provides mappings between the Bioregistry and other registries. There are 8 mappings to external registries for this resource with 4 unique external prefixes.
| Registry Name | Registry Metaprefix | External Prefix | Curate |
|---|---|---|---|
| BioContext | biocontext |
HOMOLOGENE
|
|
FAIRSharing
|
fairsharing |
FAIRsharing.mzc066
|
|
Integbio
|
integbio |
nbdc00101
|
|
Identifiers.org
|
miriam |
homologene
|
|
N2T
|
n2t |
homologene
|
|
Prefix Commons
|
prefixcommons |
homologene
|
|
| TogoID | togoid |
Homologene
|
|
Wikidata
|
wikidata |
P593
|
Providers
A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).
The local unique identifier 1000 is used to demonstrate the providers
available for HomoloGene. A guide for curating additional providers can be found
here.
| Name | Metaprefix | URI |
|---|---|---|
| HomoloGene | homologene |
https://www.ncbi.nlm.nih.gov/homologene/1000 |
| Bioregistry | bioregistry |
https://bioregistry.io/homologene:1000 |
| Identifiers.org | miriam |
https://identifiers.org/homologene:1000 |
| Name-to-Thing | n2t |
https://n2t.net/homologene:1000 |
Extra Providers
Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.
| Code | Name | URL |
|---|---|---|
CURATOR_REVIEW |
Bio2RDF | http://homologene.bio2rdf.org/describe/?url=http://bio2rdf.org/homologene:1000 |
bio2rdf |
Bio2RDF | http://bio2rdf.org/homologene:1000 |