The Genomes OnLine Database (GOLD) catalogues genome and metagenome sequencing projects from around the world, along with their associated metadata. Information in GOLD is organized into four levels: Study, Biosample/Organism, Sequencing Project and Analysis Project.
- Prefix
gold- Keywords
- genome genomics metabolomics metagenomics ontology and terminology phylogenetics
- Links
- Homepage
- Contact
- TBK Reddy 0000-0002-0871-5567 TBKReddy
- Pattern for Local Unique Identifiers
-
Local identifiers in Genomes Online Database should match this regular expression:
^[A-Z][a-z][0-9]+$ - Example Local Unique Identifier
- Gs0000008 Resolve
- Pattern for CURIES
-
Compact URIs (CURIEs) constructed from Genomes Online Database should match this regular expression:
^gold:[A-Z][a-z][0-9]+$ - Example CURIE
- gold:Gs0000008
- Publications
-
- 2021 Genomes OnLine Database (GOLD) v.8: overview and updates
- 2019 Genomes OnLine database (GOLD) v.7: updates and new features
- 2009 The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata
- 2007 The Genomes On Line Database (GOLD) in 2007: status of genomic and metagenomic projects and their associated metadata
- 2001 Genomes OnLine Database (GOLD): a monitor of genome projects world-wide
- 1999 Genomes OnLine Database (GOLD 1.0): a monitor of complete and ongoing genome projects world-wide
- Genomes OnLine Database (GOLD): a monitor of genome projects world-wide.
Ontology
A summary of the relations in the Bioregistry schema can be found here.
- Has incoming URI collisions
-
The following resources share a URI format string with
gold:
gold.metaWhen generating an extended prefix map, their respective CURIE prefixes and URI prefixes are merged into the record for
gold. If you believe that these are distinct semantic spaces and should not be merged, please open a new issue on the Bioregistry issue tracker for discussion.
Metaregistry Genomes Online Database
The metaregistry provides mappings between the Bioregistry and other registries. There are 5 mappings to external registries for this resource with 4 unique external prefixes.
| Registry Name | Registry Metaprefix | External Prefix | Curate |
|---|---|---|---|
FAIRSharing
|
fairsharing |
FAIRsharing.5q1p14
|
|
Integbio
|
integbio |
nbdc00483
|
|
Identifiers.org
|
miriam |
gold
|
|
Prefix Commons
|
prefixcommons |
gold
|
|
re3data
|
re3data |
r3d100010808
|
Providers
A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).
The local unique identifier Gs0000008 is used to demonstrate the providers
available for Genomes Online Database. A guide for curating additional providers can be found
here.
| Name | Metaprefix | URI |
|---|---|---|
| Genomes Online Database | gold |
https://gold.jgi.doe.gov/resolver?id=Gs0000008 |
| Bioregistry | bioregistry |
https://bioregistry.io/gold:Gs0000008 |
| Identifiers.org | miriam |
https://identifiers.org/gold:Gs0000008 |
Extra Providers
Additional providers curated in the Bioregistry are listed here. These are typically inherited from Identifiers.org or Prefix Commons, and need extra curation.
| Code | Name | URL |
|---|---|---|
bio2rdf |
Bio2RDF | http://bio2rdf.org/gold:Gs0000008 |