FungiDB is a genomic resource for fungal genomes. It contains contains genome sequence and annotation from several fungal classes, including the Ascomycota classes, Eurotiomycetes, Sordariomycetes, Saccharomycetes and the Basidiomycota orders, Pucciniomycetes and Tremellomycetes, and the basal 'Zygomycete' lineage Mucormycotina.

Prefix

fungidb

Keywords

genomics

Links

Homepage

Contact

Jason E. Stajich   0000-0002-7591-0020

Pattern for Local Unique Identifiers

Local identifiers in FungiDB should match this regular expression:
^[A-Za-z_0-9]+$

Example Local Unique Identifier

CNBG_0001   Resolve

Pattern for CURIES

Compact URIs (CURIEs) constructed from FungiDB should match this regular expression:
^fungidb:[A-Za-z_0-9]+$

Example CURIE

fungidb:CNBG_0001

Publications

• 2016 Database whiplash, crowdsourcing, and FungiDB
• 2014 Literature-based gene curation and proposed genetic nomenclature for cryptococcus
• 2011 FungiDB: an integrated functional genomics database for fungi
• Literature-based gene curation and proposed genetic nomenclature for cryptococcus.

The metaregistry provides mappings between the Bioregistry and other registries. There are 5 mappings to external registries for this resource with 3 unique external prefixes.

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier CNBG_0001 is used to demonstrate the providers available for FungiDB. A guide for curating additional providers can be found here.