FamPlex is a collection of resources for grounding biological entities from text and describing their hierarchical relationships.
- Prefix
fplx- Alternative Prefixes
- famplex
- Keywords
- ontology
- License
- CC0-1.0
- Links
- Homepage
- Publications
- 2018 FamPlex: a resource for entity recognition and relationship resolution of human protein families and complexes in biomedical text mining
Identifier Standards
- Pattern for Local Unique Identifiers
-
Local identifiers in FamPlex should match this regular expression:
^[a-zA-Z0-9][A-Za-z0-9_]+$ - Example Local Unique Identifier
- GPIb_IX_V Resolve
- Pattern for CURIES
-
Compact URIs (CURIEs) constructed from FamPlex should match this regular expression:
^fplx:[a-zA-Z0-9][A-Za-z0-9_]+$ - Example CURIE
- fplx:GPIb_IX_V
Contacts
Mappings to External Registries
Mappings from records in Bioregistry to external registries comprises the metaregistry. This resource has 5 mappings to external registries with 1 unique external prefixes.
| Registry Name | Registry Metaprefix | External Prefix | Curate |
|---|---|---|---|
AberOWL
|
aberowl |
FPLX
|
|
| BioContext | biocontext |
FPLX
|
|
BioPortal
|
bioportal |
FPLX
|
|
Identifiers.org
|
miriam |
fplx
|
|
N2T
|
n2t |
fplx
|
Providers
A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).
The local unique identifier GPIb_IX_V is used to demonstrate the providers
available for FamPlex. Some providers may use a different example, which is displayed in the table below.
A guide for curating additional providers can be found
here.
| Provider Name | Provider Code | URI |
|---|---|---|
| FamPlex | fplx |
https://sorgerlab.github.io/famplex/GPIb_IX_V |
| Bioregistry | bioregistry |
https://bioregistry.io/fplx:GPIb_IX_V |
| Identifiers.org | miriam |
https://identifiers.org/fplx:GPIb_IX_V |
| Name-to-Thing | n2t |
https://n2t.net/fplx:GPIb_IX_V |