Registry DataPLANT Biology Ontology

With the DataPLANT biology ontology (DPBO), DataPLANT provides an intermediate ontology that acts as a broker and bridge between the individual researcher/domain experts and main ontology providers. DPBO enables easy and agile collection of missing vocabulary as well as relationships between terms for (meta)data annotation using DataPLANT’s Swate tool.

Prefix: dpbo
Keywords: dataplant life sciences, biology ontology
License: CC-BY-4.0
Links: Homepage Repository OBO Request Discussion
Publications: 2023 DataPLANT - Harnessing the Power of Ontologies for FAIR Research Data Management

Identifier Standards

Pattern for Local Unique Identifiers: Local identifiers in DataPLANT Biology Ontology should match this regular expression:
^\d+$
Example Local Unique Identifier: 0010015 Resolve
Pattern for CURIES: Compact URIs (CURIEs) constructed from DataPLANT Biology Ontology should match this regular expression:
^dpbo:\d+$
Example CURIE: dpbo:0010015

Contacts

Contact: Kathryn Dumschott 0000-0002-9905-4011 kdumschott; Angela Kranz 0000-0002-8000-0400 AngelaKranz
Contributors: submitter Hannah Dörpholz 0000-0002-0476-9699 Hannah-Doerpholz
Reviewer: Charles Tapley Hoyt 0000-0003-4423-4370 cthoyt

Ontology

A summary of the relations in the Bioregistry schema can be found here.

In Collection (1): DataPLANT Collection

Mappings to External Registries

Mappings from records in Bioregistry to external registries comprises the metaregistry. This resource has 1 mapping to an external registry.

Registry Name	Registry Metaprefix	External Prefix	Curate
TIB-TS	`tib`	`dpbo`

Providers

Suggest

A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).

The local unique identifier 0010015 is used to demonstrate the providers available for DataPLANT Biology Ontology. Some providers may use a different example, which is displayed in the table below. A guide for curating additional providers can be found here.

Provider Name	Provider Code	URI
DataPLANT Biology Ontology	`dpbo`	https://purl.org/nfdi4plants/ontology/dpbo/DPBO_0010015
Bioregistry	`bioregistry`	https://bioregistry.io/dpbo:0010015

This name annotation was originally annotated in Bioregistry and is redistributed under the CC0 license.

Get the name:

>>> import bioregistry as br
>>> br.get_name("dpbo")
'DataPLANT Biology Ontology'

Get the license:

>>> import bioregistry as br
>>> br.get_license("dpbo")
'CC-BY-4.0'

Get the homepage:

>>> import bioregistry as br
>>> br.get_homepage("dpbo")
'https://www.nfdi4plants.org/'

Get the repository:

>>> import bioregistry as br
>>> br.get_repository("dpbo")
'https://github.com/nfdi4plants/nfdi4plants_ontology'

Get the OBO download link:

>>> import bioregistry as br
>>> br.get_obo_download("dpbo")
'https://raw.githubusercontent.com/nfdi4plants/nfdi4plants_ontology/refs/heads/main/dpbo.obo'

Get the contact's name:

>>> import bioregistry as br
>>> br.get_contact_name("dpbo")
'Kathryn Dumschott'

Get the contact's email:

>>> import bioregistry as br
>>> br.get_contact_email("dpbo")
'k.dumschott@fz-juelich.de'

Get the contact's GitHub handle:

>>> import bioregistry as br
>>> br.get_contact_github("dpbo")
'kdumschott'

Get the contact's ORCiD identifier:

>>> import bioregistry as br
>>> br.get_contact_orcid("dpbo")
'0000-0002-9905-4011'