ChEMBL is a database of bioactive compounds, their quantitative properties and bioactivities (binding constants, pharmacology and ADMET, etc). The data is abstracted and curated from the primary scientific literature.
Identifier Standards
- Pattern for Local Unique Identifiers
-
Local identifiers in ChEMBL Compound should match this regular expression:
^CHEMBL\d+$ - Example Local Unique Identifier
- CHEMBL465070 Resolve
- Pattern for CURIES
-
Compact URIs (CURIEs) constructed from ChEMBL Compound should match this regular expression:
^chembl\.compound:CHEMBL\d+$ - Example CURIE
- chembl.compound:CHEMBL465070
- Pattern for RDF URIs
- http://rdf.ebi.ac.uk/resource/chembl/molecule/$1
- Example RDF URI
- http://rdf.ebi.ac.uk/resource/chembl/molecule/CHEMBL465070
Contacts
Ontology
A summary of the relations in the Bioregistry schema can be found here.
- In Collection (1)
- Synapse.org external links
Mappings to External Registries
Mappings from records in Bioregistry to external registries comprises the metaregistry. This resource has 6 mappings to external registries with 4 unique external prefixes.
| Registry Name | Registry Metaprefix | External Prefix | Curate |
|---|---|---|---|
| BioContext | biocontext |
CHEMBL.COMPOUND
|
|
EDAM
|
edam |
2646
|
|
Identifiers.org
|
miriam |
chembl.compound
|
|
N2T
|
n2t |
chembl.compound
|
|
| TogoID | togoid |
ChemblCompound
|
|
Wikidata
|
wikidata |
P592
|
Providers
A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).
The local unique identifier CHEMBL465070 is used to demonstrate the providers
available for ChEMBL Compound. Some providers may use a different example, which is displayed in the table below.
A guide for curating additional providers can be found
here.