CharProt is a database of biochemically characterized proteins designed to support automated annotation pipelines. Entries are annotated with gene name, symbol and various controlled vocabulary terms, including Gene Ontology terms, Enzyme Commission number and TransportDB accession.
- Prefix
charprot- Links
- Homepage
- Contact
- Missing Contact
- Pattern for Local Unique Identifiers
-
Local identifiers in CharProt should match this regular expression:
^CH_\d+$ - Example Local Unique Identifier
- CH_001923 Resolve
- Pattern for CURIES
-
Compact URIs (CURIEs) constructed from CharProt should match this regular expression:
^charprot:CH_\d+$ - Example CURIE
- charprot:CH_001923
Metaregistry CharProt
The metaregistry provides mappings between the Bioregistry and other registries. There are 3 mappings to external registries for this resource with 1 unique external prefixes.
| Registry Name | Registry Metaprefix | External Prefix | Curate |
|---|---|---|---|
| BioContext | biocontext |
CHARPROT
|
|
Identifiers.org
|
miriam |
charprot
|
|
N2T
|
n2t |
charprot
|
Providers
A provider turns a local unique identifiers from a resource into a URI. Many providers are also resolvable as URLs (i.e., they can be used in a web browser).
The local unique identifier CH_001923 is used to demonstrate the providers
available for CharProt. A guide for curating additional providers can be found
here.
| Name | Metaprefix | URI |
|---|---|---|
| CharProt | charprot |
http://www.jcvi.org/charprotdb/index.cgi/view/CH_001923 |
| Bioregistry | bioregistry |
https://bioregistry.io/charprot:CH_001923 |
| Identifiers.org | miriam |
https://identifiers.org/charprot:CH_001923 |
| Name-to-Thing | n2t |
https://n2t.net/charprot:CH_001923 |